Detailed information
Bioinformatically predicted
Overview
| Name | pilT | Type | Machinery gene |
| Locus tag | DT070_RS04910 | Genome accession | NZ_CP031013 |
| Coordinates | 1035282..1036325 (+) | Length | 347 a.a. |
| NCBI ID | WP_122954397.1 | Uniprot ID | A0A5Q3HBG9 |
| Organism | Polaromonas sp. SP1 | ||
| Function | type IV pilus retraction (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1030282..1041325
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| DT070_RS04895 (DT070_04895) | - | 1033295..1033774 (+) | 480 | WP_092130297.1 | Lrp/AsnC ligand binding domain-containing protein | - |
| DT070_RS04900 (DT070_04900) | - | 1033863..1034411 (+) | 549 | WP_122954395.1 | DUF3617 domain-containing protein | - |
| DT070_RS04905 (DT070_04905) | - | 1034531..1035232 (-) | 702 | WP_122954396.1 | YggS family pyridoxal phosphate-dependent enzyme | - |
| DT070_RS04910 (DT070_04910) | pilT | 1035282..1036325 (+) | 1044 | WP_122954397.1 | type IV pilus twitching motility protein PilT | Machinery gene |
| DT070_RS04915 (DT070_04915) | pilU | 1036379..1037515 (+) | 1137 | WP_122954398.1 | PilT/PilU family type 4a pilus ATPase | Machinery gene |
| DT070_RS04920 (DT070_04920) | - | 1037604..1038518 (+) | 915 | WP_122954399.1 | NAD(P)-dependent oxidoreductase | - |
| DT070_RS04925 (DT070_04925) | - | 1038594..1039253 (-) | 660 | WP_122954400.1 | BON domain-containing protein | - |
| DT070_RS04930 (DT070_04930) | - | 1039250..1039849 (-) | 600 | WP_122954401.1 | phosphoheptose isomerase | - |
| DT070_RS04935 (DT070_04935) | - | 1040085..1040552 (-) | 468 | WP_122954402.1 | YraN family protein | - |
Sequence
Protein
Download Length: 347 a.a. Molecular weight: 38180.90 Da Isoelectric Point: 6.8355
>NTDB_id=302860 DT070_RS04910 WP_122954397.1 1035282..1036325(+) (pilT) [Polaromonas sp. SP1]
MDITQLLAFSVKNKASDLHLSAGLPPMIRVHGDVRRINIDPLDHKQVHSMVYDIMNDTQRKTYEEFLEVDFSFEIDGLAR
FRVNAFNQNRGAGAVLRTIPSKILTLEQLNAPKIFGDLAMKPRGMVLVTGPTGSGKSTTLAAMVNFLNENEYGHILTVED
PIEFVHESKKCLINQREVGPHTLSFNAALKSALREDPDAILVGEMRDLETIRLAMSAAETGHLVFGTLHTSSAAKTIDRI
IDVFPAEEKEMIRSMLSESLQAVISQTLCKTKDGAGRVAAHEIMLGTSAIRNLIREAKVAQMYSSIQTGNSVGMQTLDQN
LTELVKRNVISAAEARGKAKIPENFPG
MDITQLLAFSVKNKASDLHLSAGLPPMIRVHGDVRRINIDPLDHKQVHSMVYDIMNDTQRKTYEEFLEVDFSFEIDGLAR
FRVNAFNQNRGAGAVLRTIPSKILTLEQLNAPKIFGDLAMKPRGMVLVTGPTGSGKSTTLAAMVNFLNENEYGHILTVED
PIEFVHESKKCLINQREVGPHTLSFNAALKSALREDPDAILVGEMRDLETIRLAMSAAETGHLVFGTLHTSSAAKTIDRI
IDVFPAEEKEMIRSMLSESLQAVISQTLCKTKDGAGRVAAHEIMLGTSAIRNLIREAKVAQMYSSIQTGNSVGMQTLDQN
LTELVKRNVISAAEARGKAKIPENFPG
Nucleotide
Download Length: 1044 bp
>NTDB_id=302860 DT070_RS04910 WP_122954397.1 1035282..1036325(+) (pilT) [Polaromonas sp. SP1]
ATGGATATCACGCAGCTGCTGGCTTTTAGCGTCAAGAACAAGGCGTCTGACTTGCATTTGTCGGCAGGCTTGCCCCCCAT
GATCCGGGTCCACGGCGATGTGCGGCGCATCAACATCGACCCGCTGGACCACAAGCAGGTGCATTCCATGGTGTACGACA
TCATGAACGACACCCAGCGCAAGACGTATGAAGAATTCCTGGAAGTCGACTTTTCCTTTGAGATCGACGGGCTGGCCCGC
TTTCGCGTCAATGCCTTCAACCAGAACCGCGGCGCCGGCGCCGTGCTGCGGACCATTCCGTCCAAGATCCTGACGCTGGA
GCAGCTCAACGCCCCCAAGATTTTTGGCGACCTGGCCATGAAACCGCGCGGCATGGTGCTGGTGACCGGGCCTACCGGCT
CGGGCAAGTCCACCACGCTGGCGGCCATGGTCAACTTTTTGAACGAAAACGAGTACGGCCACATCCTCACGGTGGAAGAC
CCGATCGAGTTCGTACACGAATCCAAAAAATGCCTGATCAACCAGCGTGAAGTCGGCCCGCACACGCTGAGCTTTAACGC
CGCGCTGAAATCCGCGCTTCGCGAAGATCCGGACGCCATCCTGGTGGGCGAAATGCGCGACCTGGAAACGATTCGCCTGG
CCATGTCGGCCGCTGAAACCGGCCACCTTGTGTTCGGCACGCTGCACACCTCCAGCGCCGCCAAAACCATCGACCGGATC
ATCGACGTGTTCCCGGCCGAAGAAAAGGAAATGATCCGCTCCATGCTGTCGGAGTCTCTACAGGCCGTGATCTCGCAGAC
GCTGTGCAAAACCAAGGACGGCGCAGGCCGCGTGGCGGCGCACGAGATCATGCTGGGCACCAGCGCCATCCGCAACCTGA
TCCGCGAAGCCAAGGTTGCGCAGATGTACTCGTCCATCCAGACCGGCAACAGCGTGGGCATGCAGACGCTGGACCAGAAT
TTGACCGAGCTGGTCAAACGCAATGTCATATCGGCCGCCGAAGCGCGCGGCAAAGCCAAAATCCCCGAGAACTTCCCAGG
CTAA
ATGGATATCACGCAGCTGCTGGCTTTTAGCGTCAAGAACAAGGCGTCTGACTTGCATTTGTCGGCAGGCTTGCCCCCCAT
GATCCGGGTCCACGGCGATGTGCGGCGCATCAACATCGACCCGCTGGACCACAAGCAGGTGCATTCCATGGTGTACGACA
TCATGAACGACACCCAGCGCAAGACGTATGAAGAATTCCTGGAAGTCGACTTTTCCTTTGAGATCGACGGGCTGGCCCGC
TTTCGCGTCAATGCCTTCAACCAGAACCGCGGCGCCGGCGCCGTGCTGCGGACCATTCCGTCCAAGATCCTGACGCTGGA
GCAGCTCAACGCCCCCAAGATTTTTGGCGACCTGGCCATGAAACCGCGCGGCATGGTGCTGGTGACCGGGCCTACCGGCT
CGGGCAAGTCCACCACGCTGGCGGCCATGGTCAACTTTTTGAACGAAAACGAGTACGGCCACATCCTCACGGTGGAAGAC
CCGATCGAGTTCGTACACGAATCCAAAAAATGCCTGATCAACCAGCGTGAAGTCGGCCCGCACACGCTGAGCTTTAACGC
CGCGCTGAAATCCGCGCTTCGCGAAGATCCGGACGCCATCCTGGTGGGCGAAATGCGCGACCTGGAAACGATTCGCCTGG
CCATGTCGGCCGCTGAAACCGGCCACCTTGTGTTCGGCACGCTGCACACCTCCAGCGCCGCCAAAACCATCGACCGGATC
ATCGACGTGTTCCCGGCCGAAGAAAAGGAAATGATCCGCTCCATGCTGTCGGAGTCTCTACAGGCCGTGATCTCGCAGAC
GCTGTGCAAAACCAAGGACGGCGCAGGCCGCGTGGCGGCGCACGAGATCATGCTGGGCACCAGCGCCATCCGCAACCTGA
TCCGCGAAGCCAAGGTTGCGCAGATGTACTCGTCCATCCAGACCGGCAACAGCGTGGGCATGCAGACGCTGGACCAGAAT
TTGACCGAGCTGGTCAAACGCAATGTCATATCGGCCGCCGAAGCGCGCGGCAAAGCCAAAATCCCCGAGAACTTCCCAGG
CTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilT | Pseudomonas aeruginosa PAK |
76.522 |
99.424 |
0.761 |
| pilT | Acinetobacter nosocomialis M2 |
76.232 |
99.424 |
0.758 |
| pilT | Acinetobacter baumannii D1279779 |
76.232 |
99.424 |
0.758 |
| pilT | Acinetobacter baumannii strain A118 |
76.232 |
99.424 |
0.758 |
| pilT | Pseudomonas stutzeri DSM 10701 |
75.652 |
99.424 |
0.752 |
| pilT | Acinetobacter baylyi ADP1 |
74.783 |
99.424 |
0.744 |
| pilT | Legionella pneumophila strain Lp02 |
73.746 |
97.695 |
0.72 |
| pilT | Legionella pneumophila strain ERS1305867 |
73.746 |
97.695 |
0.72 |
| pilT | Neisseria gonorrhoeae MS11 |
66.957 |
99.424 |
0.666 |
| pilT | Neisseria meningitidis 8013 |
66.957 |
99.424 |
0.666 |
| pilT | Vibrio cholerae O1 biovar El Tor strain E7946 |
66.569 |
98.271 |
0.654 |
| pilT | Vibrio cholerae strain A1552 |
66.569 |
98.271 |
0.654 |
| pilT | Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539 |
50.435 |
99.424 |
0.501 |
| pilU | Vibrio cholerae strain A1552 |
42.687 |
96.542 |
0.412 |
| pilU | Acinetobacter baylyi ADP1 |
41.329 |
99.712 |
0.412 |
| pilU | Pseudomonas stutzeri DSM 10701 |
41.791 |
96.542 |
0.403 |