Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA2   Type   Machinery gene
Locus tag   DOM24_RS14895 Genome accession   NZ_CP030031
Coordinates   2788707..2789123 (-) Length   138 a.a.
NCBI ID   WP_111282499.1    Uniprot ID   -
Organism   Acinetobacter radioresistens strain LH6     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2783707..2794123
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DOM24_RS13160 (DOM24_13160) - 2784524..2785753 (-) 1230 WP_111282493.1 lipopolysaccharide biosynthesis protein -
  DOM24_RS13165 (DOM24_13165) - 2785763..2786614 (-) 852 WP_111282495.1 glycosyltransferase family 2 protein -
  DOM24_RS13170 (DOM24_13170) - 2786711..2788645 (-) 1935 WP_162622403.1 hypothetical protein -
  DOM24_RS14895 (DOM24_13175) pilA2 2788707..2789123 (-) 417 WP_111282499.1 pilin Machinery gene
  DOM24_RS13180 (DOM24_13180) - 2789324..2789884 (-) 561 WP_111282501.1 TPM domain-containing protein -
  DOM24_RS13185 (DOM24_13185) - 2789878..2790942 (-) 1065 WP_111282503.1 YgcG family protein -
  DOM24_RS13190 (DOM24_13190) - 2790963..2791553 (-) 591 WP_005018078.1 LemA family protein -
  DOM24_RS13195 (DOM24_13195) - 2791774..2792637 (-) 864 WP_005405249.1 metal-dependent hydrolase -

Sequence

Protein


Download         Length: 138 a.a.        Molecular weight: 14257.33 Da        Isoelectric Point: 9.7081

>NTDB_id=298594 DOM24_RS14895 WP_111282499.1 2788707..2789123(-) (pilA2) [Acinetobacter radioresistens strain LH6]
MNTQKGFTLIELMIVVAIIGILAAIAIPAYQNYTKRSHVTEGLNLAGGAKAAVSEYYSSQGVWPAGNAAAGLPASASIKG
NAVRSVAVDASKITITYNTKVEAGKTIELKAAQTSGGITWNCTGGDLKAELRPSNCRS

Nucleotide


Download         Length: 417 bp        

>NTDB_id=298594 DOM24_RS14895 WP_111282499.1 2788707..2789123(-) (pilA2) [Acinetobacter radioresistens strain LH6]
ATGAATACACAAAAAGGTTTTACCTTAATTGAACTCATGATCGTGGTTGCGATCATTGGTATCTTGGCAGCAATTGCGAT
TCCTGCTTATCAGAACTATACCAAGCGCTCTCATGTTACTGAAGGTCTAAATTTAGCGGGTGGAGCTAAGGCTGCTGTTT
CTGAGTATTATTCTTCTCAAGGTGTTTGGCCTGCAGGCAATGCTGCAGCTGGTTTACCGGCATCTGCATCTATTAAAGGT
AATGCTGTGCGTAGCGTTGCAGTAGATGCTAGTAAAATTACTATTACTTACAATACCAAGGTAGAAGCTGGTAAAACTAT
TGAGTTGAAAGCTGCTCAAACCAGTGGCGGTATTACTTGGAATTGTACTGGTGGTGACTTGAAAGCAGAATTACGTCCTA
GTAACTGTCGCTCTTAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(1-26)

Pilin (bacterial filament) (Pilin)

(36-137)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA2 Legionella pneumophila strain ERS1305867

55.556

97.826

0.543
  pilA2 Legionella pneumophila str. Paris

54.815

97.826

0.536
  comP Acinetobacter baylyi ADP1

46.053

100

0.507
  pilA Ralstonia pseudosolanacearum GMI1000

41.566

100

0.5
  pilE Neisseria gonorrhoeae MS11

41.615

100

0.486
  pilA/pilAII Pseudomonas stutzeri DSM 10701

43.885

100

0.442
  pilA Acinetobacter baumannii strain A118

42.069

100

0.442
  pilE Neisseria gonorrhoeae strain FA1090

47.656

92.754

0.442
  pilA Pseudomonas aeruginosa PAK

37.821

100

0.428
  pilA/pilA1 Eikenella corrodens VA1

39.333

100

0.428
  pilA Vibrio cholerae C6706

39.437

100

0.406
  pilA Vibrio cholerae strain A1552

39.437

100

0.406
  pilA Vibrio cholerae O1 biovar El Tor strain E7946

39.437

100

0.406
  pilA Vibrio campbellii strain DS40M4

37.931

100

0.399
  pilA Haemophilus influenzae Rd KW20

39.098

96.377

0.377
  pilA Haemophilus influenzae 86-028NP

38.346

96.377

0.37

Multiple sequence alignment