Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilH   Type   Machinery gene
Locus tag   NMCC_RS04445 Genome accession   NC_010120
Coordinates   852777..853445 (+) Length   222 a.a.
NCBI ID   WP_017629269.1    Uniprot ID   -
Organism   Neisseria meningitidis 053442     
Function   type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 847777..858445
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NMCC_RS04430 (NMCC_0845) - 847818..848327 (+) 510 WP_003687909.1 isoprenylcysteine carboxyl methyltransferase family protein -
  NMCC_RS04435 (NMCC_0846) - 850312..850899 (-) 588 WP_012221519.1 superoxide dismutase -
  NMCC_RS04440 (NMCC_0847) dnaB 851062..852468 (+) 1407 WP_017629268.1 replicative DNA helicase -
  NMCC_RS04445 (NMCC_0848) pilH 852777..853445 (+) 669 WP_017629269.1 GspH/FimT family pseudopilin Machinery gene
  NMCC_RS04450 (NMCC_0849) pilV 853475..854083 (+) 609 WP_025462077.1 type IV pilus modification protein PilV Machinery gene
  NMCC_RS04455 (NMCC_0850) pilJ 854080..855078 (+) 999 WP_012221523.1 PilW family protein Machinery gene
  NMCC_RS04460 (NMCC_0851) pilK 855057..855650 (+) 594 WP_012221524.1 pilus assembly PilX family protein Machinery gene
  NMCC_RS04465 (NMCC_0852) pilX 855655..856128 (+) 474 WP_012221525.1 PilX family type IV pilin Machinery gene
  NMCC_RS04475 (NMCC_0854) dut 857675..858127 (+) 453 WP_010951049.1 dUTP diphosphatase -

Sequence

Protein


Download         Length: 222 a.a.        Molecular weight: 24759.32 Da        Isoelectric Point: 9.8992

>NTDB_id=29648 NMCC_RS04445 WP_017629269.1 852777..853445(+) (pilH) [Neisseria meningitidis 053442]
MCTRKQQGFTLTELLIVMVIAAIMAMIALPNMSQWIASRRIASHAERIANLLRFSRGEAVRLNLPVYICPVQVKKGGAPN
NKCDSGKKGQGMLAFGDKNGNKTYDGDTVDVLLRSVVLNDDINDKRINYAFNHIAFGQTQPTADRVVWTFNQNGTFGYTN
NQHLTKQSSFSYSDGYIQIVLTDARAVSDADKKFRSAVVLIDSSGRVEVCPRNDRRTVCQYK

Nucleotide


Download         Length: 669 bp        

>NTDB_id=29648 NMCC_RS04445 WP_017629269.1 852777..853445(+) (pilH) [Neisseria meningitidis 053442]
ATGTGTACACGAAAACAACAAGGTTTCACGCTAACAGAGCTGCTCATCGTGATGGTCATTGCAGCCATTATGGCGATGAT
AGCCCTCCCCAATATGAGCCAATGGATTGCATCGCGCCGCATTGCCAGTCACGCGGAGCGGATTGCCAACCTTTTGCGTT
TCTCCAGGGGAGAAGCCGTCCGGCTCAATCTTCCTGTCTATATCTGTCCTGTTCAAGTTAAAAAAGGCGGTGCGCCCAAC
AATAAATGTGACTCCGGCAAGAAGGGGCAGGGAATGTTGGCTTTTGGCGATAAGAATGGCAATAAGACATATGACGGCGA
TACGGTGGATGTTCTCCTCCGCAGTGTGGTATTGAATGATGATATCAATGATAAGCGGATTAATTATGCCTTCAACCATA
TCGCTTTCGGTCAGACTCAGCCGACCGCTGACCGTGTTGTTTGGACGTTCAATCAAAACGGGACGTTCGGTTATACGAAT
AACCAGCATCTTACAAAACAATCCAGCTTTTCTTATTCCGACGGTTATATTCAAATCGTGCTGACAGATGCGAGAGCAGT
TTCAGATGCCGATAAGAAATTCCGTTCGGCGGTGGTTTTGATTGACAGCAGCGGCAGGGTTGAGGTTTGTCCTAGAAACG
ATAGGCGTACCGTATGCCAATATAAATGA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(4-29)

Type II transport protein GspH (GspH)

(44-205)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilH Neisseria gonorrhoeae MS11

84.163

99.55

0.838

Multiple sequence alignment