Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilT   Type   Machinery gene
Locus tag   SPAB_RS15705 Genome accession   NC_010102
Coordinates   3220306..3221286 (-) Length   326 a.a.
NCBI ID   WP_001055659.1    Uniprot ID   A0A6C6Z6V6
Organism   Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7     
Function   type IV pilus retraction (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3215306..3226286
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SPAB_RS15675 (SPAB_03857) endA 3215763..3216470 (+) 708 WP_000286133.1 deoxyribonuclease I -
  SPAB_RS15680 (SPAB_03859) rsmE 3216547..3217278 (+) 732 WP_001222488.1 16S rRNA (uracil(1498)-N(3))-methyltransferase -
  SPAB_RS15685 (SPAB_03860) gshB 3217298..3218245 (+) 948 WP_000593248.1 glutathione synthase -
  SPAB_RS15690 (SPAB_03861) - 3218461..3219024 (+) 564 WP_001053166.1 YqgE/AlgH family protein -
  SPAB_RS15695 (SPAB_03862) ruvX 3219024..3219440 (+) 417 WP_001285491.1 Holliday junction resolvase RuvX -
  SPAB_RS15700 (SPAB_03863) - 3219487..3220173 (-) 687 WP_000098325.1 IclR family transcriptional regulator -
  SPAB_RS15705 (SPAB_03864) pilT 3220306..3221286 (-) 981 WP_001055659.1 type IV pilus twitching motility protein PilT Machinery gene
  SPAB_RS15710 (SPAB_03865) - 3221304..3222008 (+) 705 WP_000997812.1 YggS family pyridoxal phosphate-dependent enzyme -
  SPAB_RS15715 (SPAB_03866) - 3222027..3222593 (+) 567 WP_001094848.1 YggT family protein -
  SPAB_RS15720 (SPAB_03867) yggU 3222590..3222880 (+) 291 WP_001277205.1 DUF167 family protein YggU -
  SPAB_RS15725 (SPAB_03868) - 3222888..3223481 (+) 594 WP_001174769.1 XTP/dITP diphosphatase -
  SPAB_RS15730 (SPAB_03869) hemW 3223474..3224610 (+) 1137 WP_001096521.1 radical SAM family heme chaperone HemW -
  SPAB_RS15735 (SPAB_03870) - 3224701..3225708 (-) 1008 WP_000252187.1 DUF1202 domain-containing protein -

Sequence

Protein


Download         Length: 326 a.a.        Molecular weight: 36140.34 Da        Isoelectric Point: 7.5355

>NTDB_id=29598 SPAB_RS15705 WP_001055659.1 3220306..3221286(-) (pilT) [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7]
MNMEEIVTLSVKHNVSDLHLCNAWPARWRKQGRMETAPFTAPDVDRLLLDWLNDAQQYQWRTHGQLDFAVSLSGTRRLRA
SAFTHQQGTSLALRLLPERCPDLAEIQTPPIVPALLASENGLILVTGATGCGKSTTLAAMVGHLNQHADKHILTLEDPIE
YRYTSKRCLIQQREIGQHCATFAAGLRAALREDPDVILLGELRDSETIRLALTAAETGHLVLATLHTRGAAQAVERLVDS
FPAQEKEPVRSQLAGSLRAVLSQKLEVDRQDGRVALFELLINTPATGNLIREGKLHQLAHVIQTGQQQGMMTFAQSAQWR
QVQGRL

Nucleotide


Download         Length: 981 bp        

>NTDB_id=29598 SPAB_RS15705 WP_001055659.1 3220306..3221286(-) (pilT) [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7]
ATGAATATGGAAGAAATTGTGACGCTTAGTGTAAAGCATAACGTCTCGGATCTACACCTGTGTAACGCCTGGCCTGCGCG
ATGGCGCAAACAAGGACGCATGGAGACCGCGCCTTTTACCGCGCCTGATGTCGACAGGCTTCTGCTTGATTGGCTTAATG
ATGCGCAACAATATCAGTGGCGAACGCACGGCCAGCTTGATTTCGCCGTCTCGCTGTCTGGCACGCGGCGCCTGCGCGCC
AGTGCGTTCACACATCAACAGGGAACGTCGCTGGCGCTACGGCTATTGCCCGAGCGTTGTCCTGATCTGGCGGAAATCCA
GACGCCGCCGATAGTACCCGCACTGCTTGCCAGCGAGAACGGACTGATTCTGGTCACTGGCGCTACTGGCTGCGGGAAAT
CCACTACGCTGGCGGCGATGGTGGGACATCTTAATCAACATGCCGATAAACACATCCTGACGCTGGAAGATCCTATTGAG
TACCGTTACACCAGCAAGCGTTGCCTGATACAGCAGCGGGAAATCGGCCAGCATTGCGCCACTTTTGCCGCCGGGCTGCG
CGCGGCGTTACGTGAAGATCCCGATGTCATTTTACTTGGAGAGCTGCGTGACAGCGAGACCATTCGCCTGGCGCTGACGG
CGGCGGAAACGGGGCATCTGGTACTGGCAACCCTGCATACTCGCGGTGCGGCGCAGGCGGTGGAAAGATTAGTGGATAGT
TTTCCGGCGCAGGAAAAAGAACCGGTACGCAGCCAACTGGCGGGTAGTCTGCGCGCCGTACTATCACAAAAACTGGAGGT
CGACAGACAGGATGGGCGCGTGGCGTTGTTTGAATTACTGATTAATACGCCAGCCACAGGGAATTTGATCCGTGAAGGCA
AACTCCATCAGTTGGCCCACGTGATACAAACTGGGCAGCAGCAGGGGATGATGACATTCGCCCAGAGCGCGCAATGGCGT
CAGGTGCAGGGACGGCTGTAG

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(77-239)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6C6Z6V6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilT Vibrio cholerae O1 biovar El Tor strain E7946

48.318

100

0.485
  pilT Vibrio cholerae strain A1552

48.318

100

0.485
  pilT Neisseria meningitidis 8013

47.256

100

0.475
  pilT Neisseria gonorrhoeae MS11

46.951

100

0.472
  pilT Acinetobacter baylyi ADP1

44.954

100

0.451
  pilT Acinetobacter baumannii strain A118

44.648

100

0.448
  pilT Acinetobacter baumannii D1279779

44.648

100

0.448
  pilT Acinetobacter nosocomialis M2

45.455

97.853

0.445
  pilT Pseudomonas aeruginosa PAK

45.886

96.933

0.445
  pilT Pseudomonas stutzeri DSM 10701

45.886

96.933

0.445
  pilT Legionella pneumophila strain ERS1305867

44.654

97.546

0.436
  pilT Legionella pneumophila strain Lp02

44.654

97.546

0.436
  pilT Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

42.138

97.546

0.411
  pilU Vibrio cholerae strain A1552

38.558

97.853

0.377
  pilU Pseudomonas stutzeri DSM 10701

35.952

100

0.365
  pilU Acinetobacter baylyi ADP1

36.842

99.08

0.365

Multiple sequence alignment