Detailed information
Bioinformatically predicted
Overview
| Name | comGC/cglC | Type | Machinery gene |
| Locus tag | DG474_RS00830 | Genome accession | NZ_CP029257 |
| Coordinates | 161276..161599 (+) | Length | 107 a.a. |
| NCBI ID | WP_255778314.1 | Uniprot ID | - |
| Organism | Streptococcus oralis strain CCUG 53468 | ||
| Function | dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 156276..166599
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| DG474_RS00810 (DG474_00815) | nagA | 157636..158787 (+) | 1152 | WP_001134441.1 | N-acetylglucosamine-6-phosphate deacetylase | - |
| DG474_RS00815 (DG474_00820) | - | 158941..159306 (+) | 366 | WP_000286399.1 | DUF1033 family protein | - |
| DG474_RS00820 (DG474_00825) | comGA/cglA/cilD | 159369..160310 (+) | 942 | WP_255778312.1 | competence type IV pilus ATPase ComGA | Machinery gene |
| DG474_RS00825 (DG474_00830) | comGB/cglB | 160258..161274 (+) | 1017 | WP_255778313.1 | competence type IV pilus assembly protein ComGB | Machinery gene |
| DG474_RS00830 (DG474_00835) | comGC/cglC | 161276..161599 (+) | 324 | WP_255778314.1 | competence type IV pilus major pilin ComGC | Machinery gene |
| DG474_RS00835 (DG474_00840) | comGD/cglD | 161562..161996 (+) | 435 | WP_255778316.1 | competence type IV pilus minor pilin ComGD | Machinery gene |
| DG474_RS00840 (DG474_00845) | comGE/cglE | 161959..162261 (+) | 303 | WP_255778318.1 | competence type IV pilus minor pilin ComGE | Machinery gene |
| DG474_RS00845 (DG474_00850) | comGF/cglF | 162224..162685 (+) | 462 | WP_255778319.1 | competence type IV pilus minor pilin ComGF | Machinery gene |
| DG474_RS00850 (DG474_00855) | comGG/cglG | 162663..163076 (+) | 414 | WP_139658263.1 | competence type IV pilus minor pilin ComGG | Machinery gene |
| DG474_RS00855 (DG474_00860) | - | 163109..163699 (+) | 591 | WP_255778320.1 | class I SAM-dependent methyltransferase | - |
| DG474_RS00860 (DG474_00865) | comYH | 163758..164711 (+) | 954 | WP_255778321.1 | class I SAM-dependent methyltransferase | Machinery gene |
| DG474_RS00865 (DG474_00870) | - | 164762..165952 (+) | 1191 | WP_000167792.1 | acetate kinase | - |
| DG474_RS00870 (DG474_00875) | rnpA | 166102..166473 (+) | 372 | WP_000748120.1 | ribonuclease P protein component | - |
Sequence
Protein
Download Length: 107 a.a. Molecular weight: 11933.11 Da Isoelectric Point: 10.1883
>NTDB_id=291389 DG474_RS00830 WP_255778314.1 161276..161599(+) (comGC/cglC) [Streptococcus oralis strain CCUG 53468]
MKKLMTKLKKVKVQAFTLVEMLVVLLIISVLLLLFVPNLTKQKDAVDDKGKAAVVKVVESQAELYRLDKNDDASLSKLQA
DGRITAEQAKAYKDYHAKQKTSQTVAD
MKKLMTKLKKVKVQAFTLVEMLVVLLIISVLLLLFVPNLTKQKDAVDDKGKAAVVKVVESQAELYRLDKNDDASLSKLQA
DGRITAEQAKAYKDYHAKQKTSQTVAD
Nucleotide
Download Length: 324 bp
>NTDB_id=291389 DG474_RS00830 WP_255778314.1 161276..161599(+) (comGC/cglC) [Streptococcus oralis strain CCUG 53468]
ATGAAAAAACTCATGACAAAATTAAAAAAAGTCAAGGTTCAAGCTTTCACTCTGGTAGAAATGTTAGTCGTTCTTTTAAT
CATCAGCGTTCTTCTCTTGCTCTTTGTACCCAATTTGACCAAGCAAAAGGATGCCGTCGATGACAAAGGAAAAGCTGCTG
TTGTCAAGGTTGTGGAAAGCCAGGCAGAACTCTATCGTTTAGATAAAAATGATGATGCCAGCCTCAGCAAATTACAAGCG
GACGGTCGTATCACAGCTGAGCAAGCTAAAGCTTATAAAGACTACCATGCAAAACAAAAAACAAGTCAAACTGTTGCAGA
TTAA
ATGAAAAAACTCATGACAAAATTAAAAAAAGTCAAGGTTCAAGCTTTCACTCTGGTAGAAATGTTAGTCGTTCTTTTAAT
CATCAGCGTTCTTCTCTTGCTCTTTGTACCCAATTTGACCAAGCAAAAGGATGCCGTCGATGACAAAGGAAAAGCTGCTG
TTGTCAAGGTTGTGGAAAGCCAGGCAGAACTCTATCGTTTAGATAAAAATGATGATGCCAGCCTCAGCAAATTACAAGCG
GACGGTCGTATCACAGCTGAGCAAGCTAAAGCTTATAAAGACTACCATGCAAAACAAAAAACAAGTCAAACTGTTGCAGA
TTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comGC/cglC | Streptococcus mitis NCTC 12261 |
89.72 |
100 |
0.897 |
| comGC/cglC | Streptococcus mitis SK321 |
86.869 |
92.523 |
0.804 |
| comGC/cglC | Streptococcus pneumoniae Rx1 |
84.848 |
92.523 |
0.785 |
| comGC/cglC | Streptococcus pneumoniae D39 |
84.848 |
92.523 |
0.785 |
| comGC/cglC | Streptococcus pneumoniae R6 |
84.848 |
92.523 |
0.785 |
| comGC/cglC | Streptococcus pneumoniae TIGR4 |
83.838 |
92.523 |
0.776 |
| comYC | Streptococcus gordonii str. Challis substr. CH1 |
67.619 |
98.131 |
0.664 |
| comYC | Streptococcus mutans UA140 |
72.165 |
90.654 |
0.654 |
| comYC | Streptococcus mutans UA159 |
72.165 |
90.654 |
0.654 |
| comGC | Lactococcus lactis subsp. cremoris KW2 |
56.863 |
95.327 |
0.542 |
| comYC | Streptococcus suis isolate S10 |
65.909 |
82.243 |
0.542 |
| comGC | Staphylococcus aureus MW2 |
52.703 |
69.159 |
0.364 |
| comGC | Staphylococcus aureus N315 |
52.703 |
69.159 |
0.364 |