Detailed information
Bioinformatically predicted
Overview
| Name | comYH | Type | Machinery gene |
| Locus tag | DG474_RS00860 | Genome accession | NZ_CP029257 |
| Coordinates | 163758..164711 (+) | Length | 317 a.a. |
| NCBI ID | WP_255778321.1 | Uniprot ID | - |
| Organism | Streptococcus oralis strain CCUG 53468 | ||
| Function | dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 158758..169711
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| DG474_RS00815 (DG474_00820) | - | 158941..159306 (+) | 366 | WP_000286399.1 | DUF1033 family protein | - |
| DG474_RS00820 (DG474_00825) | comGA/cglA/cilD | 159369..160310 (+) | 942 | WP_255778312.1 | competence type IV pilus ATPase ComGA | Machinery gene |
| DG474_RS00825 (DG474_00830) | comGB/cglB | 160258..161274 (+) | 1017 | WP_255778313.1 | competence type IV pilus assembly protein ComGB | Machinery gene |
| DG474_RS00830 (DG474_00835) | comGC/cglC | 161276..161599 (+) | 324 | WP_255778314.1 | competence type IV pilus major pilin ComGC | Machinery gene |
| DG474_RS00835 (DG474_00840) | comGD/cglD | 161562..161996 (+) | 435 | WP_255778316.1 | competence type IV pilus minor pilin ComGD | Machinery gene |
| DG474_RS00840 (DG474_00845) | comGE/cglE | 161959..162261 (+) | 303 | WP_255778318.1 | competence type IV pilus minor pilin ComGE | Machinery gene |
| DG474_RS00845 (DG474_00850) | comGF/cglF | 162224..162685 (+) | 462 | WP_255778319.1 | competence type IV pilus minor pilin ComGF | Machinery gene |
| DG474_RS00850 (DG474_00855) | comGG/cglG | 162663..163076 (+) | 414 | WP_139658263.1 | competence type IV pilus minor pilin ComGG | Machinery gene |
| DG474_RS00855 (DG474_00860) | - | 163109..163699 (+) | 591 | WP_255778320.1 | class I SAM-dependent methyltransferase | - |
| DG474_RS00860 (DG474_00865) | comYH | 163758..164711 (+) | 954 | WP_255778321.1 | class I SAM-dependent methyltransferase | Machinery gene |
| DG474_RS00865 (DG474_00870) | - | 164762..165952 (+) | 1191 | WP_000167792.1 | acetate kinase | - |
| DG474_RS00870 (DG474_00875) | rnpA | 166102..166473 (+) | 372 | WP_000748120.1 | ribonuclease P protein component | - |
| DG474_RS00875 (DG474_00880) | - | 166448..167275 (+) | 828 | WP_185756305.1 | membrane protein insertase YidC | - |
| DG474_RS00880 (DG474_00885) | jag | 167290..168276 (+) | 987 | WP_139689549.1 | RNA-binding cell elongation regulator Jag/EloR | - |
| DG474_RS00885 (DG474_00890) | - | 168332..168955 (+) | 624 | WP_255778322.1 | ribonuclease P | - |
Sequence
Protein
Download Length: 317 a.a. Molecular weight: 35542.58 Da Isoelectric Point: 4.1638
>NTDB_id=291394 DG474_RS00860 WP_255778321.1 163758..164711(+) (comYH) [Streptococcus oralis strain CCUG 53468]
MDFEKIEQAYTYLLENIQVIQSDLATNFYDVLVEQNSIYLDGETELEQVKENNQALKRLALRKEEWLKTYQFLLMKAGQT
EPLQANHQFTPDAIALLLVLIVEELFGQEEISILEMGSGMGILGATFLTSLAKKVDYLGIEVDDLLIDLAASMADVIGLQ
AGFVQGDAVRPQMLKESDVVISDLPVGYYPDDAIASRYQVSSSQEHTYAHHLLMEQGLKYLKSDGYAIFLAPSDLLTSPQ
SDLLKGWLKDEVSLAAVIALPEDIFSTASQAKSIFVLQKKRDKEIEPFVYPLTSLQDPSVLLTFKENFQNWSKGTEI
MDFEKIEQAYTYLLENIQVIQSDLATNFYDVLVEQNSIYLDGETELEQVKENNQALKRLALRKEEWLKTYQFLLMKAGQT
EPLQANHQFTPDAIALLLVLIVEELFGQEEISILEMGSGMGILGATFLTSLAKKVDYLGIEVDDLLIDLAASMADVIGLQ
AGFVQGDAVRPQMLKESDVVISDLPVGYYPDDAIASRYQVSSSQEHTYAHHLLMEQGLKYLKSDGYAIFLAPSDLLTSPQ
SDLLKGWLKDEVSLAAVIALPEDIFSTASQAKSIFVLQKKRDKEIEPFVYPLTSLQDPSVLLTFKENFQNWSKGTEI
Nucleotide
Download Length: 954 bp
>NTDB_id=291394 DG474_RS00860 WP_255778321.1 163758..164711(+) (comYH) [Streptococcus oralis strain CCUG 53468]
ATGGATTTTGAAAAAATTGAACAAGCTTATACGTATTTACTAGAGAATATCCAAGTCATCCAAAGTGATTTGGCAACCAA
CTTTTATGATGTCTTGGTAGAGCAAAATAGTATCTACCTAGATGGCGAGACTGAGCTAGAGCAGGTCAAGGAGAACAATC
AAGCCCTTAAGCGCTTAGCGCTTCGCAAGGAAGAGTGGCTCAAGACCTACCAGTTTCTCTTGATGAAGGCAGGACAAACG
GAGCCTTTACAGGCCAATCACCAGTTTACACCGGATGCCATTGCTCTCCTCTTGGTACTTATTGTGGAAGAGTTGTTTGG
ACAAGAGGAAATTAGCATCCTCGAAATGGGTTCTGGTATGGGGATTTTGGGGGCTACTTTCTTGACTTCTCTTGCTAAAA
AAGTAGATTACTTGGGAATCGAAGTGGATGATTTGCTAATTGATCTGGCAGCCAGTATGGCAGATGTGATTGGTTTGCAG
GCTGGTTTTGTTCAAGGAGACGCCGTTCGTCCGCAAATGCTTAAAGAAAGCGACGTGGTCATCAGCGATTTGCCTGTTGG
CTATTACCCAGACGATGCCATCGCTTCGCGCTATCAAGTGTCTTCTAGTCAAGAGCATACCTATGCCCATCATTTGCTGA
TGGAACAAGGCCTCAAGTACCTTAAGTCAGATGGCTATGCTATTTTTTTAGCTCCGAGTGATTTATTGACCAGCCCTCAA
AGTGATTTGTTAAAAGGGTGGCTCAAAGACGAAGTGAGTCTGGCTGCTGTCATCGCTCTGCCAGAGGATATTTTCTCAAC
TGCAAGCCAAGCTAAAAGTATTTTTGTTTTACAGAAGAAAAGAGATAAGGAAATAGAACCCTTTGTCTACCCTCTTACTA
GCTTGCAGGATCCGTCAGTTTTGTTGACCTTTAAAGAAAATTTTCAAAATTGGAGCAAAGGTACTGAAATATAA
ATGGATTTTGAAAAAATTGAACAAGCTTATACGTATTTACTAGAGAATATCCAAGTCATCCAAAGTGATTTGGCAACCAA
CTTTTATGATGTCTTGGTAGAGCAAAATAGTATCTACCTAGATGGCGAGACTGAGCTAGAGCAGGTCAAGGAGAACAATC
AAGCCCTTAAGCGCTTAGCGCTTCGCAAGGAAGAGTGGCTCAAGACCTACCAGTTTCTCTTGATGAAGGCAGGACAAACG
GAGCCTTTACAGGCCAATCACCAGTTTACACCGGATGCCATTGCTCTCCTCTTGGTACTTATTGTGGAAGAGTTGTTTGG
ACAAGAGGAAATTAGCATCCTCGAAATGGGTTCTGGTATGGGGATTTTGGGGGCTACTTTCTTGACTTCTCTTGCTAAAA
AAGTAGATTACTTGGGAATCGAAGTGGATGATTTGCTAATTGATCTGGCAGCCAGTATGGCAGATGTGATTGGTTTGCAG
GCTGGTTTTGTTCAAGGAGACGCCGTTCGTCCGCAAATGCTTAAAGAAAGCGACGTGGTCATCAGCGATTTGCCTGTTGG
CTATTACCCAGACGATGCCATCGCTTCGCGCTATCAAGTGTCTTCTAGTCAAGAGCATACCTATGCCCATCATTTGCTGA
TGGAACAAGGCCTCAAGTACCTTAAGTCAGATGGCTATGCTATTTTTTTAGCTCCGAGTGATTTATTGACCAGCCCTCAA
AGTGATTTGTTAAAAGGGTGGCTCAAAGACGAAGTGAGTCTGGCTGCTGTCATCGCTCTGCCAGAGGATATTTTCTCAAC
TGCAAGCCAAGCTAAAAGTATTTTTGTTTTACAGAAGAAAAGAGATAAGGAAATAGAACCCTTTGTCTACCCTCTTACTA
GCTTGCAGGATCCGTCAGTTTTGTTGACCTTTAAAGAAAATTTTCAAAATTGGAGCAAAGGTACTGAAATATAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comYH | Streptococcus mutans UA140 |
57.556 |
98.107 |
0.565 |
| comYH | Streptococcus mutans UA159 |
57.235 |
98.107 |
0.562 |