Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   ECSE_RS15010 Genome accession   NC_011415
Coordinates   2994949..2995686 (+) Length   245 a.a.
NCBI ID   WP_000197686.1    Uniprot ID   P0AC03
Organism   Escherichia coli SE11     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2989949..3000686
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ECSE_RS14995 (ECSE_2878) clpC 2990403..2992976 (-) 2574 WP_001235102.1 ATP-dependent chaperone ClpB Regulator
  ECSE_RS15000 (ECSE_2879) yfiH 2993106..2993837 (-) 732 WP_000040115.1 purine nucleoside phosphorylase YfiH -
  ECSE_RS15005 (ECSE_2880) rluD 2993834..2994814 (-) 981 WP_000079107.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  ECSE_RS15010 (ECSE_2881) comL 2994949..2995686 (+) 738 WP_000197686.1 outer membrane protein assembly factor BamD Machinery gene
  ECSE_RS15020 (ECSE_2882) raiA 2995957..2996298 (+) 342 WP_000178456.1 ribosome-associated translation inhibitor RaiA -
  ECSE_RS28460 pheL 2996402..2996449 (+) 48 WP_001386991.1 pheA operon leader peptide PheL -
  ECSE_RS15025 (ECSE_2883) pheA 2996548..2997708 (+) 1161 WP_000200098.1 bifunctional chorismate mutase/prephenate dehydratase -
  ECSE_RS15030 (ECSE_2884) tyrA 2997751..2998872 (-) 1122 WP_000225221.1 bifunctional chorismate mutase/prephenate dehydrogenase -
  ECSE_RS15035 (ECSE_2885) aroF 2998883..2999953 (-) 1071 WP_001168054.1 3-deoxy-7-phosphoheptulonate synthase AroF -
  ECSE_RS15040 (ECSE_2886) yfiL 3000163..3000556 (+) 394 Protein_2904 DUF2799 domain-containing protein -

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 27829.40 Da        Isoelectric Point: 6.4874

>NTDB_id=28738 ECSE_RS15010 WP_000197686.1 2994949..2995686(+) (comL) [Escherichia coli SE11]
MTRMKYLVAAATLSLFLAGCSGSKEEVPDNPPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYY
KNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFSDFSKLVRGYPNSQYT
TDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAA
NSSNT

Nucleotide


Download         Length: 738 bp        

>NTDB_id=28738 ECSE_RS15010 WP_000197686.1 2994949..2995686(+) (comL) [Escherichia coli SE11]
ATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGT
ACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGC
AACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGCAGCTGGATCTCATCTACGCCTACTAT
AAAAACGCCGATTTGCCGTTAGCGCAGGCTGCCATCGATCGTTTTATTCGCCTTAACCCGACCCATCCGAATATCGATTA
TGTCATGTACATGCGTGGCCTGACCAATATGGCGCTGGATGACAGTGCGCTGCAAGGGTTCTTTGGCGTTGACCGTAGCG
ATCGCGATCCTCAACATGCACGAGCTGCGTTTAGTGACTTTTCCAAACTGGTGCGCGGCTATCCAAACAGTCAGTACACC
ACCGATGCCACCAAACGTCTGGTATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTGGCCGAGTACTATACAGA
ACGTGGCGCATGGGTTGCCGTCGTTAACCGCGTAGAAGGAATGTTGCGCGACTACCCGGATACCCAGGCTACGCGTGATG
CGCTGCCGCTGATGGAAAATGCATACCGTCAGATGCAGATGAATGCGCAAGCTGAAAAAGTAGCGAAAATCATCGCCGCA
AACAGCAGCAATACATAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(28-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0AC03

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

38.525

99.592

0.384
  comL Neisseria gonorrhoeae MS11

37.705

99.592

0.376

Multiple sequence alignment