Detailed information
Bioinformatically predicted
Overview
| Name | pilT | Type | Machinery gene |
| Locus tag | DRED_RS05605 | Genome accession | NC_009253 |
| Coordinates | 1108909..1109991 (+) | Length | 360 a.a. |
| NCBI ID | WP_011877396.1 | Uniprot ID | A4J3B7 |
| Organism | Desulforamulus reducens MI-1 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1103909..1114991
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| DRED_RS05595 (Dred_1033) | - | 1105491..1106894 (-) | 1404 | WP_011876571.1 | IS1380-like element ISDre4 family transposase | - |
| DRED_RS05600 (Dred_1034) | - | 1107231..1108907 (+) | 1677 | WP_011877395.1 | GspE/PulE family protein | - |
| DRED_RS05605 (Dred_1035) | pilT | 1108909..1109991 (+) | 1083 | WP_011877396.1 | type IV pilus twitching motility protein PilT | Machinery gene |
| DRED_RS05610 (Dred_1036) | - | 1110038..1111243 (+) | 1206 | WP_011877397.1 | type II secretion system F family protein | - |
| DRED_RS05615 (Dred_1037) | pilM | 1111290..1112336 (+) | 1047 | WP_011877398.1 | type IV pilus biogenesis protein PilM | - |
| DRED_RS05620 (Dred_1038) | - | 1112341..1113081 (+) | 741 | WP_011877399.1 | PilN domain-containing protein | - |
| DRED_RS05625 (Dred_1039) | - | 1113087..1113617 (+) | 531 | WP_011877400.1 | type 4a pilus biogenesis protein PilO | - |
| DRED_RS05630 (Dred_1040) | - | 1113656..1114294 (+) | 639 | WP_011877401.1 | hypothetical protein | - |
Sequence
Protein
Download Length: 360 a.a. Molecular weight: 40219.40 Da Isoelectric Point: 7.2656
>NTDB_id=27758 DRED_RS05605 WP_011877396.1 1108909..1109991(+) (pilT) [Desulforamulus reducens MI-1]
MDSRKIPDINEILIRTVGMNGSDLHLNVGTSPAVRVYGELVRMEDVPRLLPKDIEDIIYPILQPHQREQLEKDLELDFSY
SIPGVSRFRGNIMWQRGTLAVNFRVVAINIPQLDDLGLPPTVKEFSRLPRGLVLVTGPTGSGKSTTLASIIDLINQERSL
NVVTIENPIEFLHSHKKSIIKQREVGIDTHSFANALRHVLRHDPDVILVGEMRDLESISIALTAAETGHLVFSTLHTQTA
TLAVNRIVDVFSEGMRNQIRQQLADSLQAVIAQQLIPRADGKGRTIAVELLLSNPAVRNLIREGKEHQLYTVMQTSRNTG
MQTMDQALATLCLTGKISRNMALERCVDKIELERALNRGF
MDSRKIPDINEILIRTVGMNGSDLHLNVGTSPAVRVYGELVRMEDVPRLLPKDIEDIIYPILQPHQREQLEKDLELDFSY
SIPGVSRFRGNIMWQRGTLAVNFRVVAINIPQLDDLGLPPTVKEFSRLPRGLVLVTGPTGSGKSTTLASIIDLINQERSL
NVVTIENPIEFLHSHKKSIIKQREVGIDTHSFANALRHVLRHDPDVILVGEMRDLESISIALTAAETGHLVFSTLHTQTA
TLAVNRIVDVFSEGMRNQIRQQLADSLQAVIAQQLIPRADGKGRTIAVELLLSNPAVRNLIREGKEHQLYTVMQTSRNTG
MQTMDQALATLCLTGKISRNMALERCVDKIELERALNRGF
Nucleotide
Download Length: 1083 bp
>NTDB_id=27758 DRED_RS05605 WP_011877396.1 1108909..1109991(+) (pilT) [Desulforamulus reducens MI-1]
ATGGATAGCCGAAAAATACCGGATATCAATGAAATATTAATACGCACCGTCGGCATGAACGGTTCAGACCTGCACTTAAA
TGTGGGGACATCTCCGGCGGTACGGGTTTATGGCGAACTTGTGCGGATGGAAGATGTACCGAGGTTGCTGCCCAAGGATA
TAGAGGATATCATTTATCCCATTCTTCAGCCACACCAAAGGGAGCAACTGGAGAAGGATTTGGAACTGGATTTCTCCTAC
TCAATTCCAGGGGTAAGTCGCTTTCGTGGTAATATTATGTGGCAAAGGGGAACGCTGGCTGTAAACTTCCGAGTGGTAGC
CATAAATATCCCACAACTGGATGATTTAGGCTTGCCGCCAACCGTCAAGGAATTTTCACGCTTACCCCGAGGGTTGGTGC
TGGTGACTGGACCCACCGGCAGCGGCAAATCCACCACCCTAGCTTCGATCATTGATCTAATTAACCAAGAAAGAAGCTTA
AACGTCGTAACCATAGAGAATCCCATTGAATTTTTGCATAGTCACAAAAAATCCATTATTAAGCAGCGGGAGGTGGGCAT
TGATACCCACTCCTTTGCCAACGCCCTACGTCATGTACTGCGCCATGACCCCGATGTTATTTTAGTTGGGGAAATGCGGG
ACTTGGAAAGTATCTCCATAGCACTTACTGCCGCCGAAACGGGTCATTTGGTGTTTTCTACCCTGCATACCCAAACAGCC
ACCTTGGCAGTGAATCGTATTGTGGATGTGTTCTCAGAAGGCATGCGTAACCAGATCAGACAGCAACTGGCAGATTCTTT
GCAAGCTGTTATTGCCCAGCAGCTGATACCCCGAGCGGACGGTAAGGGTAGAACCATTGCAGTGGAACTTTTACTCAGCA
ATCCTGCTGTGAGAAATTTAATTCGTGAAGGAAAAGAGCACCAATTGTATACGGTTATGCAGACTTCCCGGAATACCGGC
ATGCAGACCATGGATCAAGCACTGGCAACCCTTTGTCTAACAGGGAAAATTAGCCGTAACATGGCCCTTGAGCGCTGTGT
TGATAAAATTGAACTGGAACGGGCCTTGAACAGAGGCTTCTAA
ATGGATAGCCGAAAAATACCGGATATCAATGAAATATTAATACGCACCGTCGGCATGAACGGTTCAGACCTGCACTTAAA
TGTGGGGACATCTCCGGCGGTACGGGTTTATGGCGAACTTGTGCGGATGGAAGATGTACCGAGGTTGCTGCCCAAGGATA
TAGAGGATATCATTTATCCCATTCTTCAGCCACACCAAAGGGAGCAACTGGAGAAGGATTTGGAACTGGATTTCTCCTAC
TCAATTCCAGGGGTAAGTCGCTTTCGTGGTAATATTATGTGGCAAAGGGGAACGCTGGCTGTAAACTTCCGAGTGGTAGC
CATAAATATCCCACAACTGGATGATTTAGGCTTGCCGCCAACCGTCAAGGAATTTTCACGCTTACCCCGAGGGTTGGTGC
TGGTGACTGGACCCACCGGCAGCGGCAAATCCACCACCCTAGCTTCGATCATTGATCTAATTAACCAAGAAAGAAGCTTA
AACGTCGTAACCATAGAGAATCCCATTGAATTTTTGCATAGTCACAAAAAATCCATTATTAAGCAGCGGGAGGTGGGCAT
TGATACCCACTCCTTTGCCAACGCCCTACGTCATGTACTGCGCCATGACCCCGATGTTATTTTAGTTGGGGAAATGCGGG
ACTTGGAAAGTATCTCCATAGCACTTACTGCCGCCGAAACGGGTCATTTGGTGTTTTCTACCCTGCATACCCAAACAGCC
ACCTTGGCAGTGAATCGTATTGTGGATGTGTTCTCAGAAGGCATGCGTAACCAGATCAGACAGCAACTGGCAGATTCTTT
GCAAGCTGTTATTGCCCAGCAGCTGATACCCCGAGCGGACGGTAAGGGTAGAACCATTGCAGTGGAACTTTTACTCAGCA
ATCCTGCTGTGAGAAATTTAATTCGTGAAGGAAAAGAGCACCAATTGTATACGGTTATGCAGACTTCCCGGAATACCGGC
ATGCAGACCATGGATCAAGCACTGGCAACCCTTTGTCTAACAGGGAAAATTAGCCGTAACATGGCCCTTGAGCGCTGTGT
TGATAAAATTGAACTGGAACGGGCCTTGAACAGAGGCTTCTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilT | Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539 |
50.286 |
97.222 |
0.489 |
| pilT | Legionella pneumophila strain ERS1305867 |
50.437 |
95.278 |
0.481 |
| pilT | Legionella pneumophila strain Lp02 |
50.437 |
95.278 |
0.481 |
| pilT | Vibrio cholerae strain A1552 |
49.568 |
96.389 |
0.478 |
| pilT | Vibrio cholerae O1 biovar El Tor strain E7946 |
49.568 |
96.389 |
0.478 |
| pilT | Acinetobacter baumannii strain A118 |
50.595 |
93.333 |
0.472 |
| pilT | Acinetobacter baumannii D1279779 |
50.595 |
93.333 |
0.472 |
| pilT | Acinetobacter nosocomialis M2 |
50.595 |
93.333 |
0.472 |
| pilT | Acinetobacter baylyi ADP1 |
49.271 |
95.278 |
0.469 |
| pilT | Pseudomonas aeruginosa PAK |
49.412 |
94.444 |
0.467 |
| pilT | Neisseria meningitidis 8013 |
49.263 |
94.167 |
0.464 |
| pilT | Pseudomonas stutzeri DSM 10701 |
48.824 |
94.444 |
0.461 |
| pilT | Neisseria gonorrhoeae MS11 |
48.968 |
94.167 |
0.461 |
| pilU | Acinetobacter baylyi ADP1 |
40.588 |
94.444 |
0.383 |
| pilU | Pseudomonas stutzeri DSM 10701 |
40.179 |
93.333 |
0.375 |
| pilU | Vibrio cholerae strain A1552 |
38.988 |
93.333 |
0.364 |