Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilT   Type   Machinery gene
Locus tag   C5E20_RS18760 Genome accession   NZ_CP026980
Coordinates   3975363..3976379 (-) Length   338 a.a.
NCBI ID   WP_121266157.1    Uniprot ID   -
Organism   Pectobacterium parmentieri strain IFB5441     
Function   type IV pilus retraction (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3970363..3981379
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C5E20_RS18745 (C5E20_18725) nsrR 3970772..3971197 (-) 426 WP_005974824.1 nitric oxide-sensing transcriptional repressor NsrR -
  C5E20_RS18750 (C5E20_18730) - 3971486..3973057 (+) 1572 WP_014701252.1 methyl-accepting chemotaxis protein -
  C5E20_RS18755 (C5E20_18735) - 3973562..3975394 (+) 1833 WP_014701253.1 sensor domain-containing diguanylate cyclase -
  C5E20_RS18760 (C5E20_18740) pilT 3975363..3976379 (-) 1017 WP_121266157.1 type IV pilus twitching motility protein PilT Machinery gene
  C5E20_RS18765 (C5E20_18745) - 3976401..3977114 (+) 714 WP_014701255.1 YggS family pyridoxal phosphate-dependent enzyme -
  C5E20_RS18770 (C5E20_18750) proC 3977191..3978012 (+) 822 WP_121266717.1 pyrroline-5-carboxylate reductase -
  C5E20_RS18775 (C5E20_18755) - 3978062..3978631 (+) 570 WP_014701257.1 YggT family protein -
  C5E20_RS18780 (C5E20_18760) yggU 3978628..3978918 (+) 291 WP_014701258.1 DUF167 family protein YggU -
  C5E20_RS18785 (C5E20_18765) - 3978936..3979529 (+) 594 WP_014701259.1 XTP/dITP diphosphatase -
  C5E20_RS18790 (C5E20_18770) hemW 3979522..3980661 (+) 1140 WP_121266159.1 radical SAM family heme chaperone HemW -

Sequence

Protein


Download         Length: 338 a.a.        Molecular weight: 36944.37 Da        Isoelectric Point: 6.3631

>NTDB_id=274174 C5E20_RS18760 WP_121266157.1 3975363..3976379(-) (pilT) [Pectobacterium parmentieri strain IFB5441]
MELDEWIARSVKHNASDLHLCSGHPPVLRVDGRLQPENTLPRLTPEQVAQWCDAWLEPVQREQLRQIGQVDGTLMLPDGQ
RLRVNVFHQREGLSVALRIIPFFQPLLDELHAPPVLATLLEKPNGLILITGATGSGKSTTLAAMVGALNDSSDRHVITLE
DPIEFIHTSRRCLIQQREIGAHSASFAQALRAALREDPDVILLGELRDTETIRLALTAAETGHLVLSTLHTRSAPQAVDR
LIDVFPGEEKAYVRSQLATCLQAVVAQKLLPAAQGGRIALYEVLTATAAVSNLIREGKTHQLPGLMQTGVAAGMQTFEQS
DQQRCRDGLISHSCALAV

Nucleotide


Download         Length: 1017 bp        

>NTDB_id=274174 C5E20_RS18760 WP_121266157.1 3975363..3976379(-) (pilT) [Pectobacterium parmentieri strain IFB5441]
ATGGAATTGGATGAGTGGATAGCGCGTAGTGTAAAACATAATGCCTCGGATCTGCACCTTTGTAGCGGGCATCCTCCGGT
GTTACGTGTGGATGGGCGGCTACAGCCTGAAAATACCTTACCACGTTTAACGCCGGAACAGGTGGCACAATGGTGTGATG
CCTGGCTCGAACCGGTTCAGAGAGAGCAGTTGCGGCAGATTGGGCAAGTGGACGGCACGTTAATGTTGCCTGATGGGCAA
CGGCTGCGGGTCAATGTGTTTCACCAGCGGGAAGGGCTGTCTGTCGCGCTGCGTATTATCCCGTTTTTTCAACCTTTATT
GGATGAATTACATGCGCCACCCGTTCTTGCGACGCTGTTGGAGAAACCAAATGGGCTGATCCTGATTACTGGTGCGACGG
GCAGCGGTAAATCTACGACGTTGGCGGCAATGGTCGGGGCGTTAAATGACAGCAGCGATCGCCATGTGATCACGTTGGAA
GATCCGATCGAATTTATTCATACCAGCCGACGCTGCCTGATCCAACAACGAGAGATCGGTGCACACAGCGCGTCTTTTGC
GCAGGCGCTACGGGCGGCATTAAGGGAAGATCCCGATGTTATTCTACTGGGAGAACTGCGCGATACGGAGACGATTCGGC
TGGCGTTAACGGCGGCAGAAACCGGCCATCTGGTGCTGTCAACGTTACATACACGTAGTGCACCGCAGGCTGTTGATCGG
TTGATTGATGTCTTCCCCGGTGAAGAGAAAGCGTATGTTCGCAGCCAGTTAGCCACCTGTTTGCAGGCCGTGGTGGCGCA
AAAATTGTTGCCCGCAGCACAAGGTGGCCGAATCGCGCTGTATGAAGTGCTGACTGCCACCGCGGCAGTCAGCAACTTGA
TTCGTGAGGGGAAAACGCACCAGCTTCCCGGCCTGATGCAAACCGGAGTTGCTGCGGGAATGCAAACGTTCGAACAAAGC
GACCAGCAGCGTTGCCGGGATGGGCTTATTTCACACAGTTGCGCCCTTGCCGTTTAG

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(10-270)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilT Vibrio cholerae strain A1552

50.909

97.633

0.497
  pilT Vibrio cholerae O1 biovar El Tor strain E7946

50.909

97.633

0.497
  pilT Neisseria meningitidis 8013

49.702

99.408

0.494
  pilT Neisseria gonorrhoeae MS11

49.405

99.408

0.491
  pilT Acinetobacter baylyi ADP1

47.633

100

0.476
  pilT Legionella pneumophila strain ERS1305867

47.761

99.112

0.473
  pilT Pseudomonas stutzeri DSM 10701

47.761

99.112

0.473
  pilT Pseudomonas aeruginosa PAK

47.761

99.112

0.473
  pilT Legionella pneumophila strain Lp02

47.761

99.112

0.473
  pilT Acinetobacter nosocomialis M2

46.866

99.112

0.465
  pilT Acinetobacter baumannii D1279779

46.866

99.112

0.465
  pilT Acinetobacter baumannii strain A118

46.866

99.112

0.465
  pilT Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

42.433

99.704

0.423
  pilU Pseudomonas stutzeri DSM 10701

40.653

99.704

0.405
  pilU Vibrio cholerae strain A1552

39.169

99.704

0.391
  pilU Acinetobacter baylyi ADP1

38.82

95.266

0.37

Multiple sequence alignment