Detailed information
Bioinformatically predicted
Overview
| Name | pilT | Type | Machinery gene |
| Locus tag | NLP_RS28445 | Genome accession | NZ_CP026692 |
| Coordinates | 6412485..6413612 (+) | Length | 375 a.a. |
| NCBI ID | WP_104909246.1 | Uniprot ID | A0A2L2NYB5 |
| Organism | Nostoc sp. 'Lobaria pulmonaria (5183) cyanobiont' strain 5183 | ||
| Function | type IV pilus retraction (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 6407485..6418612
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| NLP_RS28435 (NLP_5494) | grpE | 6409255..6410001 (-) | 747 | WP_104909244.1 | nucleotide exchange factor GrpE | - |
| NLP_RS28440 (NLP_5495) | pilB/pilB1 | 6410371..6412377 (+) | 2007 | WP_104909245.1 | GspE/PulE family protein | Machinery gene |
| NLP_RS28445 (NLP_5496) | pilT | 6412485..6413612 (+) | 1128 | WP_104909246.1 | type IV pilus twitching motility protein PilT | Machinery gene |
| NLP_RS28450 (NLP_5497) | - | 6413692..6414915 (+) | 1224 | WP_104909247.1 | type II secretion system F family protein | - |
| NLP_RS28455 (NLP_5498) | - | 6415061..6415621 (+) | 561 | WP_104909248.1 | hypothetical protein | - |
| NLP_RS28460 (NLP_5499) | - | 6415994..6417088 (+) | 1095 | WP_199784892.1 | serine/threonine-protein kinase | - |
Sequence
Protein
Download Length: 375 a.a. Molecular weight: 41010.35 Da Isoelectric Point: 7.4488
>NTDB_id=271753 NLP_RS28445 WP_104909246.1 6412485..6413612(+) (pilT) [Nostoc sp. 'Lobaria pulmonaria (5183) cyanobiont' strain 5183]
MEMMIEDLMEQLIEMGGSDLHLSAGLPPYFRISGKLTPIGEHVLTADQCQRLIFSMLNNTQRKTLEQTWELDCSYGVKGL
ARFRVNVYKERGAYAACLRALSSKIPNFEKLGLPDIVREMCDKPRGLILVTGPTGSGKTTTLAAMIDLINRTKAEHILTV
EDPIEFVYEPIKSLVHQRQLGEDTKSFANALKAALREDPDIILVGEMRDLETISLAISAAETGHLVFGTLHTSSAAQTVD
RIIDVFPHERQTQVRVQLSNSLVGVFSQTLVSKKNPKPGEYGRVMAQEILIVTPAISNLIREGKTSQIYSAIQTGGKLGM
QTLEKVLADFYKAGTISFEAAMSKTSKPDEIQRLIGSSTPQAAAGAKPGVAAKAH
MEMMIEDLMEQLIEMGGSDLHLSAGLPPYFRISGKLTPIGEHVLTADQCQRLIFSMLNNTQRKTLEQTWELDCSYGVKGL
ARFRVNVYKERGAYAACLRALSSKIPNFEKLGLPDIVREMCDKPRGLILVTGPTGSGKTTTLAAMIDLINRTKAEHILTV
EDPIEFVYEPIKSLVHQRQLGEDTKSFANALKAALREDPDIILVGEMRDLETISLAISAAETGHLVFGTLHTSSAAQTVD
RIIDVFPHERQTQVRVQLSNSLVGVFSQTLVSKKNPKPGEYGRVMAQEILIVTPAISNLIREGKTSQIYSAIQTGGKLGM
QTLEKVLADFYKAGTISFEAAMSKTSKPDEIQRLIGSSTPQAAAGAKPGVAAKAH
Nucleotide
Download Length: 1128 bp
>NTDB_id=271753 NLP_RS28445 WP_104909246.1 6412485..6413612(+) (pilT) [Nostoc sp. 'Lobaria pulmonaria (5183) cyanobiont' strain 5183]
ATGGAAATGATGATTGAAGACTTGATGGAGCAGTTGATTGAAATGGGTGGCTCGGATTTGCATTTATCCGCAGGTTTGCC
TCCCTACTTCCGTATCAGTGGCAAACTTACCCCTATAGGTGAGCATGTATTGACAGCCGATCAATGTCAAAGGCTGATTT
TTAGTATGCTCAACAATACTCAGCGTAAAACCCTAGAGCAGACCTGGGAGTTGGATTGTTCTTATGGTGTCAAAGGTTTG
GCTCGTTTCCGGGTCAATGTCTATAAAGAGCGTGGTGCTTATGCTGCTTGCTTACGAGCATTAAGTTCTAAAATTCCTAA
CTTTGAAAAATTAGGTCTGCCAGATATCGTGCGAGAAATGTGCGATAAGCCCAGAGGACTTATTCTGGTCACAGGCCCTA
CAGGTTCCGGGAAGACAACTACTCTAGCGGCAATGATTGACTTGATTAACCGCACCAAGGCAGAGCATATTTTAACGGTG
GAAGACCCAATTGAATTTGTCTATGAACCAATTAAAAGCTTGGTTCACCAGCGGCAACTGGGAGAAGATACTAAGAGTTT
TGCTAATGCTTTGAAAGCAGCCCTGCGGGAAGATCCAGATATTATTCTGGTAGGGGAAATGCGCGATTTGGAAACGATTT
CTTTGGCGATTTCCGCTGCGGAAACAGGACACTTGGTATTTGGTACGCTACACACTAGTTCCGCCGCCCAAACTGTTGAC
CGGATTATTGACGTTTTCCCCCATGAAAGACAAACCCAAGTGCGGGTGCAATTGTCTAACTCATTAGTGGGGGTATTTAG
CCAAACCTTGGTGTCCAAGAAAAACCCTAAACCCGGTGAATATGGTCGGGTGATGGCTCAAGAAATTCTGATTGTCACTC
CTGCTATTTCCAACTTGATTCGAGAAGGCAAAACATCTCAAATTTACTCAGCGATTCAAACTGGCGGTAAATTGGGAATG
CAAACTCTGGAAAAGGTTTTAGCCGATTTTTATAAAGCCGGAACGATTTCTTTTGAGGCGGCAATGTCTAAGACTTCTAA
GCCAGATGAAATTCAACGTCTCATTGGTAGTTCTACACCGCAAGCTGCCGCAGGTGCTAAACCCGGTGTGGCTGCTAAAG
CACATTAA
ATGGAAATGATGATTGAAGACTTGATGGAGCAGTTGATTGAAATGGGTGGCTCGGATTTGCATTTATCCGCAGGTTTGCC
TCCCTACTTCCGTATCAGTGGCAAACTTACCCCTATAGGTGAGCATGTATTGACAGCCGATCAATGTCAAAGGCTGATTT
TTAGTATGCTCAACAATACTCAGCGTAAAACCCTAGAGCAGACCTGGGAGTTGGATTGTTCTTATGGTGTCAAAGGTTTG
GCTCGTTTCCGGGTCAATGTCTATAAAGAGCGTGGTGCTTATGCTGCTTGCTTACGAGCATTAAGTTCTAAAATTCCTAA
CTTTGAAAAATTAGGTCTGCCAGATATCGTGCGAGAAATGTGCGATAAGCCCAGAGGACTTATTCTGGTCACAGGCCCTA
CAGGTTCCGGGAAGACAACTACTCTAGCGGCAATGATTGACTTGATTAACCGCACCAAGGCAGAGCATATTTTAACGGTG
GAAGACCCAATTGAATTTGTCTATGAACCAATTAAAAGCTTGGTTCACCAGCGGCAACTGGGAGAAGATACTAAGAGTTT
TGCTAATGCTTTGAAAGCAGCCCTGCGGGAAGATCCAGATATTATTCTGGTAGGGGAAATGCGCGATTTGGAAACGATTT
CTTTGGCGATTTCCGCTGCGGAAACAGGACACTTGGTATTTGGTACGCTACACACTAGTTCCGCCGCCCAAACTGTTGAC
CGGATTATTGACGTTTTCCCCCATGAAAGACAAACCCAAGTGCGGGTGCAATTGTCTAACTCATTAGTGGGGGTATTTAG
CCAAACCTTGGTGTCCAAGAAAAACCCTAAACCCGGTGAATATGGTCGGGTGATGGCTCAAGAAATTCTGATTGTCACTC
CTGCTATTTCCAACTTGATTCGAGAAGGCAAAACATCTCAAATTTACTCAGCGATTCAAACTGGCGGTAAATTGGGAATG
CAAACTCTGGAAAAGGTTTTAGCCGATTTTTATAAAGCCGGAACGATTTCTTTTGAGGCGGCAATGTCTAAGACTTCTAA
GCCAGATGAAATTCAACGTCTCATTGGTAGTTCTACACCGCAAGCTGCCGCAGGTGCTAAACCCGGTGTGGCTGCTAAAG
CACATTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilT | Pseudomonas aeruginosa PAK |
54.728 |
93.067 |
0.509 |
| pilT | Pseudomonas stutzeri DSM 10701 |
53.868 |
93.067 |
0.501 |
| pilT | Acinetobacter baylyi ADP1 |
53.314 |
92.533 |
0.493 |
| pilT | Legionella pneumophila strain Lp02 |
53.026 |
92.533 |
0.491 |
| pilT | Legionella pneumophila strain ERS1305867 |
53.026 |
92.533 |
0.491 |
| pilT | Acinetobacter baumannii strain A118 |
52.45 |
92.533 |
0.485 |
| pilT | Acinetobacter nosocomialis M2 |
52.45 |
92.533 |
0.485 |
| pilT | Acinetobacter baumannii D1279779 |
52.45 |
92.533 |
0.485 |
| pilT | Neisseria gonorrhoeae MS11 |
50.737 |
90.4 |
0.459 |
| pilT | Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539 |
48.169 |
94.667 |
0.456 |
| pilT | Neisseria meningitidis 8013 |
50.442 |
90.4 |
0.456 |
| pilT | Vibrio cholerae O1 biovar El Tor strain E7946 |
49.708 |
91.2 |
0.453 |
| pilT | Vibrio cholerae strain A1552 |
49.708 |
91.2 |
0.453 |
| pilU | Pseudomonas stutzeri DSM 10701 |
38.162 |
95.733 |
0.365 |
| pilU | Acinetobacter baylyi ADP1 |
38.244 |
94.133 |
0.36 |