Detailed information
Bioinformatically predicted
Overview
| Name | pilT | Type | Machinery gene |
| Locus tag | C1I91_RS20045 | Genome accession | NZ_CP025746 |
| Coordinates | 4457586..4458638 (-) | Length | 350 a.a. |
| NCBI ID | WP_128214461.1 | Uniprot ID | - |
| Organism | Clostridium manihotivorum strain CT4 | ||
| Function | power the assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 4452586..4463638
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| C1I91_RS20030 (C1I91_20050) | ftsZ | 4453065..4454168 (-) | 1104 | WP_128214458.1 | cell division protein FtsZ | - |
| C1I91_RS20035 (C1I91_20055) | ftsA | 4454182..4455417 (-) | 1236 | WP_128214459.1 | cell division protein FtsA | - |
| C1I91_RS20040 (C1I91_20060) | - | 4455584..4456801 (-) | 1218 | WP_420808483.1 | glycosyltransferase family 2 protein | - |
| C1I91_RS20045 (C1I91_20065) | pilT | 4457586..4458638 (-) | 1053 | WP_128214461.1 | type IV pilus twitching motility protein PilT | Machinery gene |
| C1I91_RS20050 (C1I91_20070) | sigK | 4458810..4459460 (-) | 651 | WP_420808484.1 | RNA polymerase sporulation sigma factor SigK | - |
| C1I91_RS20055 (C1I91_20075) | - | 4459867..4461213 (-) | 1347 | WP_275051631.1 | MATE family efflux transporter | - |
| C1I91_RS20060 (C1I91_20080) | - | 4461396..4462934 (-) | 1539 | WP_128214464.1 | helix-turn-helix domain-containing protein | - |
Sequence
Protein
Download Length: 350 a.a. Molecular weight: 38770.75 Da Isoelectric Point: 6.8356
>NTDB_id=263581 C1I91_RS20045 WP_128214461.1 4457586..4458638(-) (pilT) [Clostridium manihotivorum strain CT4]
MITLKELLSKTIEEGASDLHLTVGIPPTIRVNGNLVKIAQNKLMPNDTEAYAREILEDSFDRYDEAGEFDTSYSIAGLGR
FRVNVFKQRNSHALAIRVIALRIPTLNELGHPGLLKELCQRKRGLVLVTGPTGSGKSTTLAAMINEINQTREAHVITLED
PIEFLHKHNKCIINQREIGKDSKSYDNALRAILREDPDVILVGEMRDLETIAIAITAAETGHLVLSTLHTIGAAKTIDRI
VDVFPPHQQQQIRIQLSAVLQGIVSQQLVPTNQGGRTAALETMVTTPAIQNLIREGKTHQIESSVQTGGKYGMKTMDMML
AELYRKGVISEETALSFSVDREMISRLMMM
MITLKELLSKTIEEGASDLHLTVGIPPTIRVNGNLVKIAQNKLMPNDTEAYAREILEDSFDRYDEAGEFDTSYSIAGLGR
FRVNVFKQRNSHALAIRVIALRIPTLNELGHPGLLKELCQRKRGLVLVTGPTGSGKSTTLAAMINEINQTREAHVITLED
PIEFLHKHNKCIINQREIGKDSKSYDNALRAILREDPDVILVGEMRDLETIAIAITAAETGHLVLSTLHTIGAAKTIDRI
VDVFPPHQQQQIRIQLSAVLQGIVSQQLVPTNQGGRTAALETMVTTPAIQNLIREGKTHQIESSVQTGGKYGMKTMDMML
AELYRKGVISEETALSFSVDREMISRLMMM
Nucleotide
Download Length: 1053 bp
>NTDB_id=263581 C1I91_RS20045 WP_128214461.1 4457586..4458638(-) (pilT) [Clostridium manihotivorum strain CT4]
GTGATAACATTAAAGGAATTATTATCAAAAACAATCGAGGAAGGCGCATCTGATCTTCATCTTACAGTAGGTATACCTCC
GACTATAAGAGTAAATGGCAATTTGGTTAAGATAGCTCAAAACAAATTGATGCCAAATGACACAGAAGCTTATGCAAGAG
AGATATTAGAAGATAGCTTTGATAGATATGATGAAGCTGGAGAATTTGATACTTCTTATTCAATTGCAGGCCTTGGGCGT
TTTAGAGTAAATGTATTTAAGCAAAGAAATAGTCATGCTCTTGCAATCAGAGTTATTGCACTAAGAATTCCTACTCTAAA
TGAACTTGGGCACCCAGGTCTTCTAAAAGAACTTTGTCAAAGAAAAAGAGGTTTAGTTCTGGTTACTGGTCCAACTGGAA
GCGGTAAGAGTACTACATTAGCAGCTATGATAAATGAAATAAATCAAACAAGAGAAGCGCACGTAATAACTTTAGAAGAT
CCAATAGAATTTTTACATAAACATAATAAGTGTATTATAAATCAAAGAGAAATAGGTAAAGATAGTAAATCATATGATAA
TGCACTTAGAGCTATTTTAAGAGAGGATCCAGATGTAATTCTTGTAGGAGAGATGAGAGATCTTGAGACTATTGCAATAG
CAATAACTGCAGCAGAAACTGGTCATCTAGTTCTTTCGACTTTACATACCATAGGAGCTGCCAAAACAATTGATAGAATA
GTTGATGTTTTTCCTCCACATCAACAGCAACAAATTAGAATACAGCTTTCGGCAGTATTACAGGGAATCGTTTCTCAACA
GTTAGTTCCTACAAATCAAGGTGGAAGAACTGCAGCTTTAGAGACTATGGTGACAACTCCTGCTATCCAAAATCTAATAA
GAGAAGGTAAGACTCATCAGATTGAATCTTCAGTTCAAACTGGTGGTAAGTACGGAATGAAGACTATGGATATGATGCTT
GCAGAATTATATAGAAAAGGTGTTATAAGTGAAGAGACTGCTTTAAGTTTTTCAGTAGATAGGGAAATGATAAGTAGGTT
AATGATGATGTAA
GTGATAACATTAAAGGAATTATTATCAAAAACAATCGAGGAAGGCGCATCTGATCTTCATCTTACAGTAGGTATACCTCC
GACTATAAGAGTAAATGGCAATTTGGTTAAGATAGCTCAAAACAAATTGATGCCAAATGACACAGAAGCTTATGCAAGAG
AGATATTAGAAGATAGCTTTGATAGATATGATGAAGCTGGAGAATTTGATACTTCTTATTCAATTGCAGGCCTTGGGCGT
TTTAGAGTAAATGTATTTAAGCAAAGAAATAGTCATGCTCTTGCAATCAGAGTTATTGCACTAAGAATTCCTACTCTAAA
TGAACTTGGGCACCCAGGTCTTCTAAAAGAACTTTGTCAAAGAAAAAGAGGTTTAGTTCTGGTTACTGGTCCAACTGGAA
GCGGTAAGAGTACTACATTAGCAGCTATGATAAATGAAATAAATCAAACAAGAGAAGCGCACGTAATAACTTTAGAAGAT
CCAATAGAATTTTTACATAAACATAATAAGTGTATTATAAATCAAAGAGAAATAGGTAAAGATAGTAAATCATATGATAA
TGCACTTAGAGCTATTTTAAGAGAGGATCCAGATGTAATTCTTGTAGGAGAGATGAGAGATCTTGAGACTATTGCAATAG
CAATAACTGCAGCAGAAACTGGTCATCTAGTTCTTTCGACTTTACATACCATAGGAGCTGCCAAAACAATTGATAGAATA
GTTGATGTTTTTCCTCCACATCAACAGCAACAAATTAGAATACAGCTTTCGGCAGTATTACAGGGAATCGTTTCTCAACA
GTTAGTTCCTACAAATCAAGGTGGAAGAACTGCAGCTTTAGAGACTATGGTGACAACTCCTGCTATCCAAAATCTAATAA
GAGAAGGTAAGACTCATCAGATTGAATCTTCAGTTCAAACTGGTGGTAAGTACGGAATGAAGACTATGGATATGATGCTT
GCAGAATTATATAGAAAAGGTGTTATAAGTGAAGAGACTGCTTTAAGTTTTTCAGTAGATAGGGAAATGATAAGTAGGTT
AATGATGATGTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilT | Legionella pneumophila strain Lp02 |
51.17 |
97.714 |
0.5 |
| pilT | Legionella pneumophila strain ERS1305867 |
51.17 |
97.714 |
0.5 |
| pilT | Acinetobacter baylyi ADP1 |
52.108 |
94.857 |
0.494 |
| pilT | Pseudomonas aeruginosa PAK |
51.506 |
94.857 |
0.489 |
| pilT | Acinetobacter baumannii strain A118 |
51.205 |
94.857 |
0.486 |
| pilT | Acinetobacter nosocomialis M2 |
51.205 |
94.857 |
0.486 |
| pilT | Acinetobacter baumannii D1279779 |
51.205 |
94.857 |
0.486 |
| pilT | Pseudomonas stutzeri DSM 10701 |
50.301 |
94.857 |
0.477 |
| pilT | Neisseria meningitidis 8013 |
48.256 |
98.286 |
0.474 |
| pilT | Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539 |
47.701 |
99.429 |
0.474 |
| pilT | Neisseria gonorrhoeae MS11 |
47.965 |
98.286 |
0.471 |
| pilT | Vibrio cholerae O1 biovar El Tor strain E7946 |
49.091 |
94.286 |
0.463 |
| pilT | Vibrio cholerae strain A1552 |
49.091 |
94.286 |
0.463 |
| pilU | Pseudomonas stutzeri DSM 10701 |
43.413 |
95.429 |
0.414 |
| pilU | Vibrio cholerae strain A1552 |
40.96 |
100 |
0.414 |
| pilU | Acinetobacter baylyi ADP1 |
40.643 |
97.714 |
0.397 |