Detailed information
Bioinformatically predicted
Overview
| Name | pilT | Type | Machinery gene |
| Locus tag | SFRI_RS14780 | Genome accession | NC_008345 |
| Coordinates | 3442325..3443362 (-) | Length | 345 a.a. |
| NCBI ID | WP_011638307.1 | Uniprot ID | A0A7W4AZG4 |
| Organism | Shewanella frigidimarina NCIMB 400 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| IScluster/Tn | 3440781..3441868 | 3442325..3443362 | flank | 457 |
Gene organization within MGE regions
Location: 3440781..3443362
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| SFRI_RS14770 (Sfri_2857) | - | 3440781..3441868 (+) | 1088 | WP_086019764.1 | IS3-like element ISShfr8 family transposase | - |
| SFRI_RS14775 (Sfri_2858) | - | 3441908..3442312 (-) | 405 | Protein_2848 | pilus assembly protein PilU | - |
| SFRI_RS14780 (Sfri_2859) | pilT | 3442325..3443362 (-) | 1038 | WP_011638307.1 | type IV pilus twitching motility protein PilT | Machinery gene |
Sequence
Protein
Download Length: 345 a.a. Molecular weight: 38387.98 Da Isoelectric Point: 6.9095
>NTDB_id=26348 SFRI_RS14780 WP_011638307.1 3442325..3443362(-) (pilT) [Shewanella frigidimarina NCIMB 400]
MEITELLAFSVKHKASDLHLSAGVSPMIRVDGEVRKINLPALDHQGVHSLVYDIMNDKQRKDYEEHLEIDFSFEVPNLAR
FRVNAFNQSRGAGAVFRTIPSEILSLEQLGAPEIFKKIASYPRGLVLVTGPTGSGKSTTLAAMVDYVNENRHDHILTIED
PIEFVHQNKQCLINQREVHKHTHSFNAALRSALREDPDVILVGEMRDLETIRLAMTAAETGHLVFGTLHTTSAAKTIDRV
VDVFPEGEKSMVRTMLSESLQAVISQTLIKKIGGGRVAAHEIMMGTPAIRNLIREDKVAQMYSAIQTGMSHGMQTLDQCL
QNLVNRGLITREDAMQKSSNKQANF
MEITELLAFSVKHKASDLHLSAGVSPMIRVDGEVRKINLPALDHQGVHSLVYDIMNDKQRKDYEEHLEIDFSFEVPNLAR
FRVNAFNQSRGAGAVFRTIPSEILSLEQLGAPEIFKKIASYPRGLVLVTGPTGSGKSTTLAAMVDYVNENRHDHILTIED
PIEFVHQNKQCLINQREVHKHTHSFNAALRSALREDPDVILVGEMRDLETIRLAMTAAETGHLVFGTLHTTSAAKTIDRV
VDVFPEGEKSMVRTMLSESLQAVISQTLIKKIGGGRVAAHEIMMGTPAIRNLIREDKVAQMYSAIQTGMSHGMQTLDQCL
QNLVNRGLITREDAMQKSSNKQANF
Nucleotide
Download Length: 1038 bp
>NTDB_id=26348 SFRI_RS14780 WP_011638307.1 3442325..3443362(-) (pilT) [Shewanella frigidimarina NCIMB 400]
ATGGAAATCACTGAATTACTCGCCTTTAGTGTAAAACACAAAGCATCAGATCTACATCTTTCAGCAGGCGTTTCTCCTAT
GATCCGCGTTGACGGTGAGGTAAGGAAAATTAATTTACCTGCGTTAGATCATCAAGGCGTTCATAGTCTCGTGTATGACA
TCATGAATGATAAACAACGTAAAGACTATGAAGAACATCTAGAAATCGATTTTTCATTCGAAGTGCCTAATCTGGCGCGT
TTTCGTGTTAACGCATTTAATCAGTCCCGTGGCGCTGGCGCGGTATTCCGTACCATTCCTTCTGAAATCTTGTCTCTTGA
GCAACTTGGCGCACCAGAAATATTTAAAAAAATCGCCAGTTATCCACGTGGATTAGTATTAGTAACCGGGCCTACCGGTT
CGGGTAAATCAACCACATTGGCTGCGATGGTCGATTATGTTAATGAAAATCGACATGACCATATTTTAACCATTGAAGAC
CCGATAGAATTCGTTCATCAGAACAAACAATGCTTAATCAACCAGCGTGAAGTACACAAACACACACACAGCTTTAATGC
AGCCCTAAGAAGTGCACTACGTGAAGATCCAGATGTTATTCTTGTGGGTGAAATGCGCGACCTTGAAACCATTCGTTTAG
CCATGACCGCCGCTGAAACGGGTCACTTAGTATTTGGTACTTTGCATACCACCTCAGCCGCAAAAACCATTGACCGTGTG
GTCGATGTATTCCCAGAAGGTGAAAAGAGCATGGTTCGCACCATGCTGTCTGAGTCACTTCAGGCGGTTATTTCACAAAC
ATTGATCAAGAAAATAGGCGGTGGCCGAGTGGCCGCTCATGAAATTATGATGGGTACACCAGCGATTCGAAATCTTATTC
GTGAAGATAAAGTTGCACAAATGTATTCAGCTATTCAAACGGGTATGTCTCACGGTATGCAAACTCTGGATCAATGTCTG
CAAAACTTAGTCAATCGTGGGTTAATTACCCGTGAAGATGCGATGCAGAAGAGTTCGAATAAACAAGCTAATTTCTAA
ATGGAAATCACTGAATTACTCGCCTTTAGTGTAAAACACAAAGCATCAGATCTACATCTTTCAGCAGGCGTTTCTCCTAT
GATCCGCGTTGACGGTGAGGTAAGGAAAATTAATTTACCTGCGTTAGATCATCAAGGCGTTCATAGTCTCGTGTATGACA
TCATGAATGATAAACAACGTAAAGACTATGAAGAACATCTAGAAATCGATTTTTCATTCGAAGTGCCTAATCTGGCGCGT
TTTCGTGTTAACGCATTTAATCAGTCCCGTGGCGCTGGCGCGGTATTCCGTACCATTCCTTCTGAAATCTTGTCTCTTGA
GCAACTTGGCGCACCAGAAATATTTAAAAAAATCGCCAGTTATCCACGTGGATTAGTATTAGTAACCGGGCCTACCGGTT
CGGGTAAATCAACCACATTGGCTGCGATGGTCGATTATGTTAATGAAAATCGACATGACCATATTTTAACCATTGAAGAC
CCGATAGAATTCGTTCATCAGAACAAACAATGCTTAATCAACCAGCGTGAAGTACACAAACACACACACAGCTTTAATGC
AGCCCTAAGAAGTGCACTACGTGAAGATCCAGATGTTATTCTTGTGGGTGAAATGCGCGACCTTGAAACCATTCGTTTAG
CCATGACCGCCGCTGAAACGGGTCACTTAGTATTTGGTACTTTGCATACCACCTCAGCCGCAAAAACCATTGACCGTGTG
GTCGATGTATTCCCAGAAGGTGAAAAGAGCATGGTTCGCACCATGCTGTCTGAGTCACTTCAGGCGGTTATTTCACAAAC
ATTGATCAAGAAAATAGGCGGTGGCCGAGTGGCCGCTCATGAAATTATGATGGGTACACCAGCGATTCGAAATCTTATTC
GTGAAGATAAAGTTGCACAAATGTATTCAGCTATTCAAACGGGTATGTCTCACGGTATGCAAACTCTGGATCAATGTCTG
CAAAACTTAGTCAATCGTGGGTTAATTACCCGTGAAGATGCGATGCAGAAGAGTTCGAATAAACAAGCTAATTTCTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilT | Acinetobacter nosocomialis M2 |
80.409 |
99.13 |
0.797 |
| pilT | Acinetobacter baumannii D1279779 |
80.409 |
99.13 |
0.797 |
| pilT | Acinetobacter baumannii strain A118 |
80.409 |
99.13 |
0.797 |
| pilT | Pseudomonas aeruginosa PAK |
79.29 |
97.971 |
0.777 |
| pilT | Pseudomonas stutzeri DSM 10701 |
77.681 |
100 |
0.777 |
| pilT | Acinetobacter baylyi ADP1 |
80.243 |
95.362 |
0.765 |
| pilT | Legionella pneumophila strain Lp02 |
75.073 |
98.841 |
0.742 |
| pilT | Legionella pneumophila strain ERS1305867 |
75.073 |
98.841 |
0.742 |
| pilT | Vibrio cholerae O1 biovar El Tor strain E7946 |
72.404 |
97.681 |
0.707 |
| pilT | Vibrio cholerae strain A1552 |
72.404 |
97.681 |
0.707 |
| pilT | Neisseria meningitidis 8013 |
68.895 |
99.71 |
0.687 |
| pilT | Neisseria gonorrhoeae MS11 |
68.605 |
99.71 |
0.684 |
| pilT | Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539 |
50.442 |
98.261 |
0.496 |
| pilU | Pseudomonas stutzeri DSM 10701 |
42.262 |
97.391 |
0.412 |
| pilU | Vibrio cholerae strain A1552 |
41.349 |
98.841 |
0.409 |
| pilU | Acinetobacter baylyi ADP1 |
40.237 |
97.971 |
0.394 |