Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilT   Type   Machinery gene
Locus tag   CU052_RS08325 Genome accession   NZ_CP025537
Coordinates   1725190..1726230 (+) Length   346 a.a.
NCBI ID   WP_005425810.1    Uniprot ID   A0A9X3MNX0
Organism   Vibrio harveyi strain 345     
Function   type IV pilus retraction (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1720190..1731230
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CU052_RS08290 (CU052_08690) hemW 1720210..1721382 (-) 1173 WP_061065392.1 radical SAM family heme chaperone HemW -
  CU052_RS08295 (CU052_08695) - 1721401..1722003 (-) 603 WP_017189094.1 XTP/dITP diphosphatase -
  CU052_RS08300 (CU052_08700) - 1722109..1722540 (-) 432 WP_101904465.1 DUF4426 domain-containing protein -
  CU052_RS08305 (CU052_08705) yggU 1722600..1722890 (-) 291 WP_101904466.1 DUF167 family protein YggU -
  CU052_RS08310 (CU052_08710) - 1722890..1723447 (-) 558 WP_005425806.1 YggT family protein -
  CU052_RS08315 (CU052_08715) proC 1723501..1724319 (-) 819 WP_050904301.1 pyrroline-5-carboxylate reductase -
  CU052_RS08320 (CU052_08720) - 1724451..1725161 (-) 711 WP_101904467.1 YggS family pyridoxal phosphate-dependent enzyme -
  CU052_RS08325 (CU052_08725) pilT 1725190..1726230 (+) 1041 WP_005425810.1 type IV pilus twitching motility protein PilT Machinery gene
  CU052_RS08330 (CU052_08730) pilU 1726262..1727368 (+) 1107 WP_101904468.1 PilT/PilU family type 4a pilus ATPase Machinery gene
  CU052_RS08335 (CU052_08735) ruvX 1727428..1727853 (-) 426 WP_005449738.1 Holliday junction resolvase RuvX -
  CU052_RS08340 (CU052_08740) - 1727903..1728466 (-) 564 WP_005449740.1 YqgE/AlgH family protein -
  CU052_RS08345 (CU052_08745) gshB 1728596..1729546 (-) 951 WP_005449741.1 glutathione synthase -
  CU052_RS08350 (CU052_08750) rsmE 1729561..1730292 (-) 732 WP_101904469.1 16S rRNA (uracil(1498)-N(3))-methyltransferase -
  CU052_RS08355 (CU052_08755) endA 1730439..1731134 (-) 696 WP_005449743.1 deoxyribonuclease I -

Sequence

Protein


Download         Length: 346 a.a.        Molecular weight: 38634.12 Da        Isoelectric Point: 6.5043

>NTDB_id=262400 CU052_RS08325 WP_005425810.1 1725190..1726230(+) (pilT) [Vibrio harveyi strain 345]
MDITELLDFSVKHNASDLHLSAGVPPMVRIDGDVRKLGIPAFTHQEVHRLVFEIMNDAQRSEFEEKLEVDFSFELHNVGR
FRVNAFNQSRGCAAVFRTIPSSIPTLEELEAPEIFRKIANAEKGLVLVTGPTGSGKSTTLAAIVDYINRNHNKHVLTIED
PIEFVHTNNKCLINQREVHRDTHSFQNALRSALREDPDVILVGEMRDKETISLALTAAETGHLVFGTLHTSSAAKTIDRI
IDVFPGSDKDMVRSMLSESLRSVIAQKLLKRNGGGRIACHEIMMATPAIRNLIREDKVAQMYSIIQTGAAHGMQTMEQNA
RQLMAQGMVSREEVDKKVEIEAQQFS

Nucleotide


Download         Length: 1041 bp        

>NTDB_id=262400 CU052_RS08325 WP_005425810.1 1725190..1726230(+) (pilT) [Vibrio harveyi strain 345]
ATGGATATCACTGAGTTACTGGATTTTAGTGTAAAACATAATGCTTCGGATCTACATCTTTCTGCAGGTGTACCACCAAT
GGTTCGTATTGATGGTGATGTAAGAAAGCTGGGCATTCCAGCGTTTACACACCAAGAAGTGCATCGTTTGGTTTTTGAAA
TCATGAACGATGCGCAGCGCAGTGAGTTCGAAGAAAAACTCGAAGTCGATTTTTCATTTGAATTGCATAACGTTGGCCGT
TTTCGTGTCAACGCTTTCAACCAATCTCGCGGTTGTGCGGCTGTGTTCCGTACCATCCCAAGTAGCATTCCAACACTGGA
AGAGCTAGAAGCCCCAGAGATCTTCAGAAAGATTGCCAATGCTGAAAAAGGCCTGGTACTGGTTACCGGTCCAACGGGGT
CTGGTAAATCGACTACCTTGGCAGCCATTGTTGACTACATTAACCGTAATCACAATAAGCACGTCCTAACAATTGAAGAT
CCGATTGAATTTGTTCACACCAACAATAAGTGTCTGATCAACCAACGTGAAGTACACCGTGATACACACAGCTTCCAAAA
CGCACTGCGCAGCGCATTACGTGAAGACCCGGATGTGATTCTAGTTGGTGAGATGCGTGATAAAGAAACCATCAGTTTGG
CGCTGACGGCTGCTGAAACGGGTCACCTTGTTTTCGGTACGCTGCACACTAGCTCAGCAGCGAAAACCATCGACCGTATT
ATCGACGTATTCCCAGGTAGTGACAAAGACATGGTGCGTTCGATGCTGTCGGAGTCGCTGCGTTCGGTTATTGCACAAAA
ACTGTTAAAACGTAATGGTGGTGGTCGTATTGCTTGTCATGAAATCATGATGGCGACACCTGCGATCCGTAACCTTATTC
GTGAAGACAAAGTCGCGCAGATGTATTCGATCATTCAGACCGGTGCGGCGCATGGCATGCAGACCATGGAGCAGAATGCT
CGTCAATTGATGGCACAAGGCATGGTATCGCGTGAAGAAGTGGATAAGAAAGTTGAAATTGAAGCGCAGCAATTCTCGTA
A

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(11-270)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilT Vibrio cholerae O1 biovar El Tor strain E7946

86.377

99.711

0.861
  pilT Vibrio cholerae strain A1552

86.377

99.711

0.861
  pilT Acinetobacter baumannii D1279779

72.121

95.376

0.688
  pilT Acinetobacter baumannii strain A118

72.121

95.376

0.688
  pilT Acinetobacter nosocomialis M2

71.818

95.376

0.685
  pilT Acinetobacter baylyi ADP1

71.515

95.376

0.682
  pilT Pseudomonas aeruginosa PAK

68.824

98.266

0.676
  pilT Pseudomonas stutzeri DSM 10701

69.027

97.977

0.676
  pilT Legionella pneumophila strain Lp02

67.674

95.665

0.647
  pilT Legionella pneumophila strain ERS1305867

67.674

95.665

0.647
  pilT Neisseria meningitidis 8013

64.118

98.266

0.63
  pilT Neisseria gonorrhoeae MS11

63.824

98.266

0.627
  pilT Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

49.857

100

0.503
  pilU Vibrio cholerae strain A1552

41.617

96.532

0.402
  pilU Pseudomonas stutzeri DSM 10701

40.419

96.532

0.39

Multiple sequence alignment