Detailed information
Bioinformatically predicted
Overview
| Name | pilT | Type | Machinery gene |
| Locus tag | CPR_RS08690 | Genome accession | NC_008262 |
| Coordinates | 1934175..1935227 (-) | Length | 350 a.a. |
| NCBI ID | WP_011592647.1 | Uniprot ID | Q0SS55 |
| Organism | Clostridium perfringens SM101 | ||
| Function | type IV pilus retraction (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1929175..1940227
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CPR_RS08665 (CPR_1733) | sigE | 1929769..1930476 (-) | 708 | WP_003449468.1 | RNA polymerase sporulation sigma factor SigE | - |
| CPR_RS08670 (CPR_1734) | spoIIGA | 1930490..1931296 (-) | 807 | WP_011592644.1 | sigma-E processing peptidase SpoIIGA | - |
| CPR_RS08680 (CPR_1735) | ftsZ | 1931700..1932845 (-) | 1146 | WP_011592645.1 | cell division protein FtsZ | - |
| CPR_RS08685 (CPR_1736) | - | 1932859..1934097 (-) | 1239 | WP_011592646.1 | cell division FtsA domain-containing protein | - |
| CPR_RS08690 (CPR_1737) | pilT | 1934175..1935227 (-) | 1053 | WP_011592647.1 | type IV pilus twitching motility protein PilT | Machinery gene |
| CPR_RS08695 (CPR_1738) | sigK | 1935408..1936109 (-) | 702 | WP_011592648.1 | RNA polymerase sporulation sigma factor SigK | - |
| CPR_RS08700 (CPR_1739) | - | 1936172..1937839 (-) | 1668 | WP_011592649.1 | penicillin-binding transpeptidase domain-containing protein | - |
| CPR_RS08705 (CPR_1740) | udk | 1937951..1938577 (-) | 627 | WP_011592650.1 | uridine kinase | - |
| CPR_RS08710 (CPR_1741) | - | 1938577..1939806 (-) | 1230 | WP_011592651.1 | U32 family peptidase | - |
Sequence
Protein
Download Length: 350 a.a. Molecular weight: 39020.72 Da Isoelectric Point: 5.4507
>NTDB_id=26193 CPR_RS08690 WP_011592647.1 1934175..1935227(-) (pilT) [Clostridium perfringens SM101]
MQSLAELLELTVKEGASDLHLTVGISPIIKVNGKLVRLEHEILRPEDTEAYAKEILQDAYEKYDAIGEYDTSYSIHGKGR
FRVNIYKQRNSTALAIRVISLDMPTLDSLGYPETLKDICNLKRGLVLVTGPTGSGKSTTLAALINEINSNRESHIITIED
PIEFLHKHNKSIVNQREIGKDTLSYERALKAALREDPDVILIGEMRDLETISTAITAAETGHLVFSTLHTIGAAKTIDRI
VDVFPPHQQEQIKIQLASVLQTIISQQLVETIDGERTASLEIMVATPAIKNLIREGKTHQIESSIQTGSKYGMRTMDMEL
ANLYREGIITQETAMNSAIDREILSRLLMY
MQSLAELLELTVKEGASDLHLTVGISPIIKVNGKLVRLEHEILRPEDTEAYAKEILQDAYEKYDAIGEYDTSYSIHGKGR
FRVNIYKQRNSTALAIRVISLDMPTLDSLGYPETLKDICNLKRGLVLVTGPTGSGKSTTLAALINEINSNRESHIITIED
PIEFLHKHNKSIVNQREIGKDTLSYERALKAALREDPDVILIGEMRDLETISTAITAAETGHLVFSTLHTIGAAKTIDRI
VDVFPPHQQEQIKIQLASVLQTIISQQLVETIDGERTASLEIMVATPAIKNLIREGKTHQIESSIQTGSKYGMRTMDMEL
ANLYREGIITQETAMNSAIDREILSRLLMY
Nucleotide
Download Length: 1053 bp
>NTDB_id=26193 CPR_RS08690 WP_011592647.1 1934175..1935227(-) (pilT) [Clostridium perfringens SM101]
ATGCAAAGTTTAGCAGAACTTTTAGAGTTAACAGTTAAAGAAGGAGCATCTGATTTGCATTTAACAGTAGGTATTTCTCC
TATAATAAAAGTTAATGGAAAATTAGTAAGGTTAGAACATGAAATATTGCGCCCTGAAGATACTGAAGCGTATGCTAAAG
AGATATTACAGGATGCATATGAAAAGTATGATGCTATTGGAGAATACGATACATCATATTCAATACATGGTAAAGGTAGA
TTTAGAGTTAATATATATAAACAAAGAAATAGTACAGCTTTAGCTATAAGAGTTATATCTTTAGATATGCCAACTTTAGA
TAGTTTAGGATATCCTGAGACTTTAAAGGATATATGTAATCTTAAAAGAGGACTTGTATTAGTTACAGGACCTACTGGAA
GTGGTAAAAGTACAACTTTAGCAGCTTTAATCAATGAAATAAATAGTAATAGAGAATCTCATATAATAACAATAGAAGAT
CCTATAGAGTTTCTTCATAAACATAATAAATCTATTGTAAACCAAAGAGAGATAGGAAAGGATACTTTAAGTTATGAAAG
AGCCTTAAAAGCAGCTCTTAGAGAGGATCCTGATGTTATTTTGATTGGGGAAATGAGAGATTTGGAGACTATTTCAACAG
CTATAACAGCGGCAGAGACTGGACACTTAGTATTTTCAACTCTTCATACTATAGGAGCTGCTAAGACTATAGATAGAATA
GTGGATGTTTTTCCACCACATCAACAAGAGCAAATAAAAATACAGTTAGCTTCTGTTTTACAAACAATTATATCACAACA
ATTAGTGGAAACCATTGATGGAGAGAGAACTGCGTCATTAGAAATAATGGTTGCTACACCAGCTATAAAAAACTTAATAA
GAGAAGGAAAAACTCATCAAATAGAATCTTCTATCCAAACTGGAAGTAAATATGGAATGAGAACTATGGACATGGAACTT
GCTAATCTATATAGAGAAGGTATAATAACACAAGAAACGGCAATGAATTCTGCTATAGATAGGGAAATTTTAAGTCGATT
ATTGATGTATTAA
ATGCAAAGTTTAGCAGAACTTTTAGAGTTAACAGTTAAAGAAGGAGCATCTGATTTGCATTTAACAGTAGGTATTTCTCC
TATAATAAAAGTTAATGGAAAATTAGTAAGGTTAGAACATGAAATATTGCGCCCTGAAGATACTGAAGCGTATGCTAAAG
AGATATTACAGGATGCATATGAAAAGTATGATGCTATTGGAGAATACGATACATCATATTCAATACATGGTAAAGGTAGA
TTTAGAGTTAATATATATAAACAAAGAAATAGTACAGCTTTAGCTATAAGAGTTATATCTTTAGATATGCCAACTTTAGA
TAGTTTAGGATATCCTGAGACTTTAAAGGATATATGTAATCTTAAAAGAGGACTTGTATTAGTTACAGGACCTACTGGAA
GTGGTAAAAGTACAACTTTAGCAGCTTTAATCAATGAAATAAATAGTAATAGAGAATCTCATATAATAACAATAGAAGAT
CCTATAGAGTTTCTTCATAAACATAATAAATCTATTGTAAACCAAAGAGAGATAGGAAAGGATACTTTAAGTTATGAAAG
AGCCTTAAAAGCAGCTCTTAGAGAGGATCCTGATGTTATTTTGATTGGGGAAATGAGAGATTTGGAGACTATTTCAACAG
CTATAACAGCGGCAGAGACTGGACACTTAGTATTTTCAACTCTTCATACTATAGGAGCTGCTAAGACTATAGATAGAATA
GTGGATGTTTTTCCACCACATCAACAAGAGCAAATAAAAATACAGTTAGCTTCTGTTTTACAAACAATTATATCACAACA
ATTAGTGGAAACCATTGATGGAGAGAGAACTGCGTCATTAGAAATAATGGTTGCTACACCAGCTATAAAAAACTTAATAA
GAGAAGGAAAAACTCATCAAATAGAATCTTCTATCCAAACTGGAAGTAAATATGGAATGAGAACTATGGACATGGAACTT
GCTAATCTATATAGAGAAGGTATAATAACACAAGAAACGGCAATGAATTCTGCTATAGATAGGGAAATTTTAAGTCGATT
ATTGATGTATTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilT | Neisseria meningitidis 8013 |
50 |
98.286 |
0.491 |
| pilT | Neisseria gonorrhoeae MS11 |
50 |
98.286 |
0.491 |
| pilT | Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539 |
49.422 |
98.857 |
0.489 |
| pilT | Pseudomonas aeruginosa PAK |
50.298 |
96 |
0.483 |
| pilT | Legionella pneumophila strain ERS1305867 |
49.123 |
97.714 |
0.48 |
| pilT | Legionella pneumophila strain Lp02 |
49.123 |
97.714 |
0.48 |
| pilT | Acinetobacter baylyi ADP1 |
50.301 |
94.857 |
0.477 |
| pilT | Acinetobacter baumannii D1279779 |
49.405 |
96 |
0.474 |
| pilT | Acinetobacter nosocomialis M2 |
49.405 |
96 |
0.474 |
| pilT | Pseudomonas stutzeri DSM 10701 |
49.405 |
96 |
0.474 |
| pilT | Acinetobacter baumannii strain A118 |
49.405 |
96 |
0.474 |
| pilT | Vibrio cholerae O1 biovar El Tor strain E7946 |
50.459 |
93.429 |
0.471 |
| pilT | Vibrio cholerae strain A1552 |
50.459 |
93.429 |
0.471 |
| pilU | Pseudomonas stutzeri DSM 10701 |
43.976 |
94.857 |
0.417 |
| pilU | Vibrio cholerae strain A1552 |
40.653 |
96.286 |
0.391 |
| pilU | Acinetobacter baylyi ADP1 |
39.296 |
97.429 |
0.383 |