Detailed information    

insolico Bioinformatically predicted

Overview

Name   comX/sigX/comX2/sigX2   Type   Regulator
Locus tag   SPSF3K_RS03115 Genome accession   NZ_CP025420
Coordinates   642098..642577 (+) Length   159 a.a.
NCBI ID   WP_004234846.1    Uniprot ID   -
Organism   Streptococcus parauberis strain SPOF3K     
Function   activate transcription of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 637098..647577
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SPSF3K_RS03115 (SPSF3K_00641) comX/sigX/comX2/sigX2 642098..642577 (+) 480 WP_004234846.1 sigma-70 family RNA polymerase sigma factor Regulator
  SPSF3K_RS03120 (SPSF3K_00642) - 642691..643218 (+) 528 WP_003103362.1 YqeG family HAD IIIA-type phosphatase -
  SPSF3K_RS03125 (SPSF3K_00643) yqeH 643218..644336 (+) 1119 WP_004234843.1 ribosome biogenesis GTPase YqeH -
  SPSF3K_RS03130 (SPSF3K_00644) yhbY 644364..644675 (+) 312 WP_003105311.1 ribosome assembly RNA-binding protein YhbY -
  SPSF3K_RS03135 (SPSF3K_00645) - 644702..645334 (+) 633 WP_003104077.1 nicotinate-nucleotide adenylyltransferase -
  SPSF3K_RS03140 (SPSF3K_00646) yqeK 645331..645921 (+) 591 WP_004234841.1 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) YqeK -
  SPSF3K_RS03145 (SPSF3K_00647) - 645924..646430 (+) 507 WP_004234839.1 cysteine hydrolase family protein -
  SPSF3K_RS03150 (SPSF3K_00648) rsfS 646448..646801 (+) 354 WP_003105715.1 ribosome silencing factor -

Sequence

Protein


Download         Length: 159 a.a.        Molecular weight: 19435.56 Da        Isoelectric Point: 9.1761

>NTDB_id=261165 SPSF3K_RS03115 WP_004234846.1 642098..642577(+) (comX/sigX/comX2/sigX2) [Streptococcus parauberis strain SPOF3K]
MDQFDKCFKTVKPTIYKFMRFYYIHLWEKDDWFQEGRLILHDLLHRNPDLYKNEQQLLVYFKTKFSSHLKDVIRFQESQK
RRFNRMPYEEIGEIAHKIPSQGLVLDEFIAYQSIIEQISGILTKEEQSQLYALMRGERFIGKRALLRKIKPFFIDFLDE

Nucleotide


Download         Length: 480 bp        

>NTDB_id=261165 SPSF3K_RS03115 WP_004234846.1 642098..642577(+) (comX/sigX/comX2/sigX2) [Streptococcus parauberis strain SPOF3K]
TTGGATCAATTTGATAAATGTTTTAAAACTGTCAAACCAACTATTTATAAATTTATGCGGTTTTATTATATTCACTTATG
GGAAAAGGATGATTGGTTTCAAGAAGGTCGACTCATTTTGCATGATTTACTTCATCGAAATCCAGACTTGTATAAGAATG
AGCAACAACTATTAGTATATTTTAAAACTAAATTTTCTTCACACTTAAAGGATGTTATCCGTTTCCAAGAGAGTCAGAAG
AGACGATTTAATAGAATGCCATATGAAGAAATTGGAGAAATAGCTCATAAAATTCCAAGTCAAGGATTGGTATTGGATGA
GTTTATTGCATACCAATCAATTATTGAACAGATTTCTGGTATCTTAACCAAAGAAGAGCAGTCTCAATTATATGCATTGA
TGAGAGGCGAAAGGTTTATTGGTAAAAGAGCACTATTAAGAAAAATTAAACCATTTTTTATCGATTTCTTGGATGAATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comX/sigX/comX1/sigX1 Streptococcus pyogenes JRS4

57.333

94.34

0.541
  comX/sigX/comX2/sigX2 Streptococcus pyogenes MGAS8232

57.333

94.34

0.541
  comX/sigX/comX1/sigX1 Streptococcus pyogenes MGAS8232

57.333

94.34

0.541
  comX/sigX/comX2/sigX2 Streptococcus pyogenes JRS4

57.333

94.34

0.541
  comX/sigX/comX2/sigX2 Streptococcus pyogenes MGAS315

57.333

94.34

0.541
  comX/sigX/comX1/sigX1 Streptococcus pyogenes MGAS315

57.333

94.34

0.541
  comX/sigX Streptococcus infantarius subsp. infantarius ATCC BAA-102

47.403

96.855

0.459
  comX Streptococcus sobrinus strain NIDR 6715-7

45.455

96.855

0.44
  comX/sigX Streptococcus mutans UA159

44.516

97.484

0.434
  comR/comR2 Streptococcus gordonii str. Challis substr. CH1

41.558

96.855

0.403
  comR/comR1 Streptococcus gordonii str. Challis substr. CH1

41.558

96.855

0.403
  comX/comX1 Streptococcus pneumoniae Rx1

42.282

93.711

0.396
  comX/comX2 Streptococcus pneumoniae TIGR4

42.282

93.711

0.396
  comX/comX1 Streptococcus pneumoniae TIGR4

42.282

93.711

0.396
  comX/comX2 Streptococcus pneumoniae Rx1

42.282

93.711

0.396
  comX/comX2 Streptococcus pneumoniae D39

42.282

93.711

0.396
  comX/comX1 Streptococcus pneumoniae D39

42.282

93.711

0.396
  comX/comX2 Streptococcus pneumoniae R6

42.282

93.711

0.396
  comX/comX1 Streptococcus pneumoniae R6

42.282

93.711

0.396
  comX/sigX/comX2/sigX2 Streptococcus mitis NCTC 12261

40.523

96.226

0.39
  comX/sigX/comX2/sigX2 Streptococcus mitis SK321

40.523

96.226

0.39
  comX/sigX/comX1/sigX1 Streptococcus mitis SK321

40.523

96.226

0.39
  comX/sigX/comX1/sigX1 Streptococcus mitis NCTC 12261

39.216

96.226

0.377
  comX/sigX Streptococcus suis D9

38.961

96.855

0.377
  comX/sigX Streptococcus suis isolate S10

38.961

96.855

0.377
  comX/sigX Streptococcus suis P1/7

38.961

96.855

0.377
  comX Streptococcus thermophilus LMG 18311

37.908

96.226

0.365
  comX Streptococcus thermophilus LMD-9

37.908

96.226

0.365

Multiple sequence alignment