Detailed information
Bioinformatically predicted
Overview
| Name | pilT | Type | Machinery gene |
| Locus tag | ACID345_RS07160 | Genome accession | NC_008009 |
| Coordinates | 1688187..1689314 (-) | Length | 375 a.a. |
| NCBI ID | WP_011522195.1 | Uniprot ID | Q1IRV7 |
| Organism | Candidatus Koribacter versatilis Ellin345 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1683187..1694314
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ACID345_RS07145 (Acid345_1388) | - | 1683678..1685069 (-) | 1392 | WP_011522192.1 | sigma-54-dependent transcriptional regulator | - |
| ACID345_RS07150 (Acid345_1389) | - | 1685170..1686822 (-) | 1653 | WP_011522193.1 | two-component system sensor histidine kinase NtrB | - |
| ACID345_RS07155 (Acid345_1390) | - | 1686925..1688139 (-) | 1215 | WP_011522194.1 | type II secretion system F family protein | - |
| ACID345_RS07160 (Acid345_1391) | pilT | 1688187..1689314 (-) | 1128 | WP_011522195.1 | type IV pilus twitching motility protein PilT | Machinery gene |
| ACID345_RS07165 (Acid345_1392) | pilB | 1689374..1691089 (-) | 1716 | WP_011522196.1 | type IV-A pilus assembly ATPase PilB | - |
Sequence
Protein
Download Length: 375 a.a. Molecular weight: 41384.66 Da Isoelectric Point: 7.5562
>NTDB_id=25807 ACID345_RS07160 WP_011522195.1 1688187..1689314(-) (pilT) [Candidatus Koribacter versatilis Ellin345]
MAVTLSDLLKKMLEMQGSDLHITTNSPPQVRVHGKLVPLDLAPLTPAETKQLAYSVMTDAQKHRFEEDLELDFSFGLKGL
ARFRANCFNQRGACGSVYRVIPFEIKNFDQLGLPAVVSKLCDRPRGLILITGPTGSGKSTTLAAMIDKINIDRHEHIITI
EDPIEFVHQHKNCLINQREVHSDTKGFSQALRAALREDPDVVLIGEMRDLETIESALRIAETGHLTLATLHTNSASSTIN
RIIDVFPSHQQSQIRAQLSLVLEGIMCQSLLPKVGGNGRAMAMEILVPNAAVRNLIREDKIHQIYSSMQTGQDKFGMQTF
NQALATLVAQKQITMELAVQRSSMPEELQDMIARGHTLQGRGGTTAVNAAAPTRR
MAVTLSDLLKKMLEMQGSDLHITTNSPPQVRVHGKLVPLDLAPLTPAETKQLAYSVMTDAQKHRFEEDLELDFSFGLKGL
ARFRANCFNQRGACGSVYRVIPFEIKNFDQLGLPAVVSKLCDRPRGLILITGPTGSGKSTTLAAMIDKINIDRHEHIITI
EDPIEFVHQHKNCLINQREVHSDTKGFSQALRAALREDPDVVLIGEMRDLETIESALRIAETGHLTLATLHTNSASSTIN
RIIDVFPSHQQSQIRAQLSLVLEGIMCQSLLPKVGGNGRAMAMEILVPNAAVRNLIREDKIHQIYSSMQTGQDKFGMQTF
NQALATLVAQKQITMELAVQRSSMPEELQDMIARGHTLQGRGGTTAVNAAAPTRR
Nucleotide
Download Length: 1128 bp
>NTDB_id=25807 ACID345_RS07160 WP_011522195.1 1688187..1689314(-) (pilT) [Candidatus Koribacter versatilis Ellin345]
ATGGCCGTTACTCTTAGCGATCTGTTGAAAAAGATGTTGGAGATGCAGGGCTCTGACCTGCACATCACCACGAACTCGCC
GCCGCAAGTGCGGGTTCACGGCAAACTGGTTCCCCTCGACCTGGCGCCGCTAACTCCTGCCGAAACGAAGCAGCTGGCCT
ATAGCGTCATGACTGACGCCCAGAAGCACCGTTTCGAAGAGGACCTCGAGCTAGATTTCTCGTTCGGATTGAAGGGACTC
GCCCGTTTCCGCGCCAACTGCTTCAACCAGCGCGGCGCGTGCGGCTCCGTTTACCGCGTCATTCCATTCGAGATCAAGAA
CTTCGACCAGCTCGGACTGCCCGCAGTCGTTTCCAAGCTCTGCGATCGTCCGCGCGGCCTGATCCTCATCACTGGCCCGA
CCGGTTCCGGTAAGTCCACCACGCTCGCGGCCATGATCGACAAGATCAATATTGACCGTCACGAGCACATCATCACCATC
GAAGATCCGATCGAGTTCGTGCACCAGCACAAGAACTGCCTGATCAACCAGCGCGAAGTCCACTCCGATACCAAGGGCTT
CTCGCAGGCGCTCCGCGCCGCTCTCCGTGAAGACCCCGACGTGGTCCTGATCGGCGAAATGCGCGATTTGGAGACGATTG
AATCCGCGTTACGTATTGCAGAAACCGGCCACTTGACGCTGGCTACCCTGCATACCAACTCGGCAAGCTCCACCATCAAC
CGTATTATTGACGTCTTCCCTTCGCACCAGCAGTCGCAGATTCGCGCGCAGCTCTCGCTGGTGCTGGAAGGCATCATGTG
CCAATCGTTGTTGCCGAAGGTCGGCGGTAACGGTCGCGCCATGGCCATGGAGATCCTGGTTCCGAACGCCGCTGTCCGCA
ACCTCATCCGCGAAGACAAGATCCACCAGATCTATTCGTCGATGCAGACCGGCCAGGACAAGTTCGGCATGCAGACCTTC
AACCAGGCGCTGGCAACGCTGGTCGCCCAGAAACAGATCACGATGGAACTCGCCGTGCAGCGCTCGTCGATGCCGGAAGA
GTTGCAGGACATGATCGCCCGTGGACACACCCTGCAAGGTCGAGGGGGCACCACAGCCGTTAATGCCGCCGCACCAACGC
GGAGATAG
ATGGCCGTTACTCTTAGCGATCTGTTGAAAAAGATGTTGGAGATGCAGGGCTCTGACCTGCACATCACCACGAACTCGCC
GCCGCAAGTGCGGGTTCACGGCAAACTGGTTCCCCTCGACCTGGCGCCGCTAACTCCTGCCGAAACGAAGCAGCTGGCCT
ATAGCGTCATGACTGACGCCCAGAAGCACCGTTTCGAAGAGGACCTCGAGCTAGATTTCTCGTTCGGATTGAAGGGACTC
GCCCGTTTCCGCGCCAACTGCTTCAACCAGCGCGGCGCGTGCGGCTCCGTTTACCGCGTCATTCCATTCGAGATCAAGAA
CTTCGACCAGCTCGGACTGCCCGCAGTCGTTTCCAAGCTCTGCGATCGTCCGCGCGGCCTGATCCTCATCACTGGCCCGA
CCGGTTCCGGTAAGTCCACCACGCTCGCGGCCATGATCGACAAGATCAATATTGACCGTCACGAGCACATCATCACCATC
GAAGATCCGATCGAGTTCGTGCACCAGCACAAGAACTGCCTGATCAACCAGCGCGAAGTCCACTCCGATACCAAGGGCTT
CTCGCAGGCGCTCCGCGCCGCTCTCCGTGAAGACCCCGACGTGGTCCTGATCGGCGAAATGCGCGATTTGGAGACGATTG
AATCCGCGTTACGTATTGCAGAAACCGGCCACTTGACGCTGGCTACCCTGCATACCAACTCGGCAAGCTCCACCATCAAC
CGTATTATTGACGTCTTCCCTTCGCACCAGCAGTCGCAGATTCGCGCGCAGCTCTCGCTGGTGCTGGAAGGCATCATGTG
CCAATCGTTGTTGCCGAAGGTCGGCGGTAACGGTCGCGCCATGGCCATGGAGATCCTGGTTCCGAACGCCGCTGTCCGCA
ACCTCATCCGCGAAGACAAGATCCACCAGATCTATTCGTCGATGCAGACCGGCCAGGACAAGTTCGGCATGCAGACCTTC
AACCAGGCGCTGGCAACGCTGGTCGCCCAGAAACAGATCACGATGGAACTCGCCGTGCAGCGCTCGTCGATGCCGGAAGA
GTTGCAGGACATGATCGCCCGTGGACACACCCTGCAAGGTCGAGGGGGCACCACAGCCGTTAATGCCGCCGCACCAACGC
GGAGATAG
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilT | Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539 |
49.057 |
98.933 |
0.485 |
| pilT | Legionella pneumophila strain ERS1305867 |
54.491 |
89.067 |
0.485 |
| pilT | Legionella pneumophila strain Lp02 |
54.491 |
89.067 |
0.485 |
| pilT | Pseudomonas stutzeri DSM 10701 |
51.744 |
91.733 |
0.475 |
| pilT | Acinetobacter baylyi ADP1 |
51.744 |
91.733 |
0.475 |
| pilT | Acinetobacter baumannii D1279779 |
51.453 |
91.733 |
0.472 |
| pilT | Acinetobacter baumannii strain A118 |
51.453 |
91.733 |
0.472 |
| pilT | Pseudomonas aeruginosa PAK |
51.453 |
91.733 |
0.472 |
| pilT | Acinetobacter nosocomialis M2 |
51.163 |
91.733 |
0.469 |
| pilT | Neisseria meningitidis 8013 |
49.709 |
91.733 |
0.456 |
| pilT | Neisseria gonorrhoeae MS11 |
49.419 |
91.733 |
0.453 |
| pilT | Vibrio cholerae O1 biovar El Tor strain E7946 |
50.613 |
86.933 |
0.44 |
| pilT | Vibrio cholerae strain A1552 |
50.613 |
86.933 |
0.44 |
| pilU | Pseudomonas stutzeri DSM 10701 |
44.193 |
94.133 |
0.416 |
| pilU | Vibrio cholerae strain A1552 |
41.379 |
92.8 |
0.384 |
| pilU | Acinetobacter baylyi ADP1 |
40.346 |
92.533 |
0.373 |