Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilT   Type   Machinery gene
Locus tag   DSY_RS12815 Genome accession   NC_007907
Coordinates   2734116..2735153 (-) Length   345 a.a.
NCBI ID   WP_144678722.1    Uniprot ID   -
Organism   Desulfitobacterium hafniense Y51     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2729116..2740153
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DSY_RS12790 (DSY2380) - 2729557..2730057 (-) 501 WP_011460283.1 hypothetical protein -
  DSY_RS12795 (DSY2381) - 2730050..2731522 (-) 1473 WP_011460284.1 PilN domain-containing protein -
  DSY_RS12800 (DSY2382) - 2731549..2732310 (-) 762 WP_011460285.1 prepilin peptidase -
  DSY_RS12805 (DSY2383) - 2732358..2732846 (-) 489 WP_011460286.1 type II secretion system protein -
  DSY_RS12810 (DSY2384) - 2732880..2734103 (-) 1224 WP_011460287.1 type II secretion system F family protein -
  DSY_RS12815 (DSY2385) pilT 2734116..2735153 (-) 1038 WP_144678722.1 type IV pilus twitching motility protein PilT Machinery gene
  DSY_RS12820 (DSY2386) - 2735167..2736927 (-) 1761 WP_011460289.1 GspE/PulE family protein -
  DSY_RS12825 - 2736920..2737330 (-) 411 WP_035213812.1 hypothetical protein -
  DSY_RS12830 (DSY2387) - 2737273..2737806 (-) 534 WP_011460290.1 PulJ/GspJ family protein -
  DSY_RS12835 (DSY2388) - 2737841..2738224 (-) 384 WP_011460291.1 type IV pilus modification PilV family protein -
  DSY_RS12840 (DSY2389) - 2738221..2738559 (-) 339 WP_011460292.1 type II secretion system protein GspG -
  DSY_RS12845 (DSY2390) aroB 2738829..2739911 (-) 1083 WP_011460293.1 3-dehydroquinate synthase -

Sequence

Protein


Download         Length: 345 a.a.        Molecular weight: 38084.60 Da        Isoelectric Point: 6.8389

>NTDB_id=25526 DSY_RS12815 WP_144678722.1 2734116..2735153(-) (pilT) [Desulfitobacterium hafniense Y51]
MMTIEQLLKEAAQRRASDIHLTVDSPPVFRIDGSLVRAEEEILTPNVLDEMARTLMDSAQSSKFKESGEIDFSHSIPDVG
RFRVNAFRQRGAAGIAIRLIPFNISTPEQLGLPPVCIEFANLRKGLVLVTGPTGSGKSTTLASMIDYINRTRSEHIVTVE
DPIEYMHKHRLSLVNQREVGSDTQSFANALRAALRQDPDVILVGEMRDLETISTAVTAAETGHLVFSTLHTNDATQAVDR
MIDVFPPFQQQQMRVQLAAVLQGVIAQQLLPRKDQQGRVAAQEILVVTPAVRNLIREGKTHQIANTMQTGGKLGMQSMEK
AIQEHVRAGRISNAVAQEMIQNMGH

Nucleotide


Download         Length: 1038 bp        

>NTDB_id=25526 DSY_RS12815 WP_144678722.1 2734116..2735153(-) (pilT) [Desulfitobacterium hafniense Y51]
ATCATGACTATAGAGCAACTATTAAAAGAAGCAGCTCAGCGACGTGCCTCGGATATTCATCTTACAGTGGACAGTCCTCC
AGTTTTCCGTATTGATGGTTCTTTGGTAAGGGCTGAAGAAGAGATATTAACTCCCAATGTGCTGGATGAAATGGCGAGAA
CTTTAATGGACAGTGCTCAGAGTAGCAAGTTTAAAGAGTCTGGAGAAATAGATTTTTCCCACAGCATTCCCGATGTAGGT
CGTTTCCGTGTCAATGCTTTTCGCCAACGAGGAGCTGCGGGAATCGCCATTCGTCTTATTCCCTTTAATATCTCGACACC
GGAGCAGCTTGGTCTTCCCCCTGTCTGCATCGAGTTTGCCAATTTACGCAAAGGGCTGGTTCTTGTGACGGGTCCTACGG
GAAGCGGGAAGTCTACCACCTTAGCCTCAATGATTGATTACATCAATAGGACCAGGTCGGAGCATATCGTTACCGTTGAA
GATCCCATCGAGTATATGCATAAACATCGCCTAAGCTTAGTTAATCAGCGGGAAGTGGGAAGTGACACCCAATCCTTTGC
CAATGCTTTGCGAGCAGCATTGCGGCAGGATCCGGATGTAATCCTCGTCGGTGAAATGCGGGATCTTGAGACCATAAGTA
CGGCGGTGACGGCTGCAGAGACAGGGCATCTGGTATTTAGTACCCTCCATACCAATGATGCTACTCAGGCAGTGGACAGA
ATGATCGACGTGTTTCCGCCTTTTCAGCAGCAGCAAATGCGGGTCCAGTTGGCAGCGGTTCTTCAAGGAGTTATCGCCCA
ACAGCTGCTTCCTCGTAAGGATCAACAGGGAAGAGTTGCAGCCCAGGAAATTCTTGTTGTCACACCGGCAGTAAGAAATC
TCATCAGAGAAGGAAAGACCCATCAAATTGCTAACACAATGCAAACCGGCGGTAAACTTGGGATGCAAAGTATGGAGAAA
GCTATTCAGGAACATGTCCGGGCTGGACGTATCTCCAATGCAGTCGCGCAAGAAATGATACAAAATATGGGCCACTAA

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(7-271)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilT Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

57.911

91.594

0.53
  pilT Legionella pneumophila strain Lp02

51.462

99.13

0.51
  pilT Legionella pneumophila strain ERS1305867

51.462

99.13

0.51
  pilT Pseudomonas aeruginosa PAK

50.742

97.681

0.496
  pilT Neisseria meningitidis 8013

50

99.13

0.496
  pilT Vibrio cholerae strain A1552

50.294

98.551

0.496
  pilT Vibrio cholerae O1 biovar El Tor strain E7946

50.294

98.551

0.496
  pilT Pseudomonas stutzeri DSM 10701

50.445

97.681

0.493
  pilT Neisseria gonorrhoeae MS11

49.415

99.13

0.49
  pilT Acinetobacter baumannii D1279779

49.405

97.391

0.481
  pilT Acinetobacter nosocomialis M2

49.405

97.391

0.481
  pilT Acinetobacter baumannii strain A118

49.405

97.391

0.481
  pilT Acinetobacter baylyi ADP1

49.107

97.391

0.478
  pilU Vibrio cholerae strain A1552

44.713

95.942

0.429
  pilU Pseudomonas stutzeri DSM 10701

43.202

95.942

0.414
  pilU Acinetobacter baylyi ADP1

40.476

97.391

0.394

Multiple sequence alignment