Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   DMA15_RS11245 Genome accession   NZ_CP029617
Coordinates   2506685..2508418 (+) Length   577 a.a.
NCBI ID   WP_125512630.1    Uniprot ID   -
Organism   Streptomyces sp. WAC 01529     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2501685..2513418
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DMA15_RS11210 (DMA15_11205) - 2502530..2504002 (+) 1473 WP_125512626.1 hypothetical protein -
  DMA15_RS11235 (DMA15_11230) - 2504719..2505021 (+) 303 WP_125512628.1 YtxH domain-containing protein -
  DMA15_RS11240 (DMA15_11235) - 2505096..2506523 (+) 1428 WP_125512629.1 FGGY family carbohydrate kinase -
  DMA15_RS11245 (DMA15_11240) rcrP 2506685..2508418 (+) 1734 WP_125512630.1 ABC transporter ATP-binding protein Regulator
  DMA15_RS11250 (DMA15_11245) rcrQ 2508418..2510337 (+) 1920 WP_125512631.1 ABC transporter ATP-binding protein Regulator
  DMA15_RS11255 (DMA15_11250) - 2510454..2511800 (-) 1347 WP_125512632.1 RNA polymerase sigma factor -

Sequence

Protein


Download         Length: 577 a.a.        Molecular weight: 62441.70 Da        Isoelectric Point: 6.1952

>NTDB_id=255028 DMA15_RS11245 WP_125512630.1 2506685..2508418(+) (rcrP) [Streptomyces sp. WAC 01529]
MLIRLLRTHLRPYKKPIALLVLLQFLQTCASLYLPTLNADIIDNGVVQGDTGYILTYGGIMIAVTIVQMVCNIGAVFYGA
RTASAFGRDVRAAVFDRVQSFSAREVGQFGAPSLITRTTNDVQQVQMLALMSFTLMVTAPIMCVGGIVMALGLDVPLSGI
LVAVVPVLGVSVSLIVRRLRPLFRSMQVRLDTVNRVLREQITGNRVIRAFVRDAYEKERFRKANADLTDVSLGTGKLLAL
MFPIVMTVVNISSVAVVWFGAHRIDDGGMEIGALTAFLAYLMQIVMSVMMATFMFMMVPRAEVCAERIEEVLDTESSVVP
PADPVRELRSHGHLELRGVGFRYPGAEEPVLKAIDLLARPGETTAVIGSTGSGKSTLLSLVPRLIDATEGQVLVGGVVVA
TIEPALLAKTVSLVPQKPYLFAGTVATNLRYGNPDATDEELWHALEVAQAKEFVSGLEGGLGAPISQGGTNVSGGQRQRL
AIARTLVQRPEIYLFDDSFSALDYATDAALRRALSRETAEATVVIVAQRVSTIRDADRIIVLDEGRVVGTGGHHELMESN
ETYREIVLSQLTEAEAA

Nucleotide


Download         Length: 1734 bp        

>NTDB_id=255028 DMA15_RS11245 WP_125512630.1 2506685..2508418(+) (rcrP) [Streptomyces sp. WAC 01529]
GTGCTCATACGACTCCTGCGGACGCACCTGCGCCCGTACAAGAAACCGATCGCCCTGCTGGTGCTCCTGCAGTTCCTGCA
GACCTGCGCCTCGCTCTATCTGCCCACCCTGAACGCCGACATCATCGACAACGGTGTCGTCCAGGGGGACACGGGTTACA
TCCTCACCTACGGCGGCATCATGATCGCCGTCACCATCGTGCAGATGGTCTGCAACATCGGCGCCGTCTTCTACGGCGCG
CGGACCGCCTCCGCCTTCGGGCGCGACGTGCGGGCCGCCGTCTTCGACCGCGTGCAGTCCTTCTCCGCGCGCGAGGTGGG
CCAGTTCGGCGCCCCTTCGCTGATCACGCGGACCACCAACGACGTCCAGCAGGTGCAGATGCTGGCCCTGATGTCGTTCA
CGCTGATGGTGACCGCGCCCATCATGTGCGTCGGCGGCATCGTGATGGCGCTCGGCCTGGACGTGCCGCTCTCCGGGATC
CTTGTCGCCGTCGTGCCCGTGCTCGGCGTCAGCGTGAGCCTGATCGTGCGGCGGCTGCGGCCGCTGTTCCGCAGCATGCA
GGTACGGCTCGACACCGTGAACCGCGTGCTGCGCGAGCAGATCACCGGCAACCGCGTCATCCGCGCCTTCGTCCGTGACG
CGTACGAGAAGGAGCGGTTCCGTAAGGCCAACGCCGATCTGACCGACGTATCGCTGGGTACCGGCAAGCTGCTCGCGCTG
ATGTTCCCGATCGTGATGACCGTCGTGAACATCTCCTCCGTCGCGGTGGTGTGGTTCGGCGCCCACCGCATCGACGACGG
CGGCATGGAGATCGGCGCGCTCACCGCGTTCCTCGCCTATCTGATGCAGATCGTCATGTCCGTGATGATGGCGACCTTCA
TGTTCATGATGGTGCCGCGCGCGGAGGTCTGCGCCGAGCGCATCGAGGAGGTCCTGGACACCGAGAGCAGTGTGGTGCCG
CCGGCCGATCCGGTGCGTGAGCTGCGCAGCCACGGGCACCTGGAGCTCCGGGGCGTGGGCTTCCGCTACCCGGGCGCCGA
GGAGCCCGTCCTGAAGGCCATCGACCTGCTCGCCCGGCCCGGCGAGACGACCGCCGTGATCGGGTCGACCGGCAGCGGCA
AATCGACGCTGCTCAGCCTCGTACCGCGACTGATCGACGCGACGGAGGGGCAGGTCCTGGTCGGCGGCGTGGTCGTGGCC
ACGATCGAGCCCGCGCTGCTCGCCAAGACGGTGAGCCTGGTCCCACAGAAGCCGTACCTCTTCGCCGGCACGGTCGCCAC
CAACCTTCGCTACGGCAACCCTGACGCGACGGACGAGGAGCTGTGGCACGCCCTTGAGGTCGCCCAGGCCAAGGAGTTCG
TGTCGGGCCTGGAGGGCGGCCTCGGCGCGCCCATCTCGCAGGGCGGCACGAACGTGTCCGGTGGTCAGCGCCAGCGCCTG
GCCATCGCGCGCACGCTGGTGCAGCGCCCGGAGATCTACCTCTTCGACGACTCCTTCTCCGCGCTCGACTACGCCACGGA
CGCGGCGCTCCGCAGGGCCCTGTCCCGGGAGACCGCCGAGGCGACCGTGGTCATCGTCGCCCAGCGGGTGTCCACCATCC
GCGACGCCGACCGCATCATCGTGCTCGACGAGGGCCGGGTGGTGGGCACCGGAGGCCATCACGAGCTGATGGAGAGCAAT
GAGACCTACCGGGAGATCGTCCTCTCCCAGCTGACGGAAGCGGAGGCCGCGTAA

Domains

Predicted by InterProScan.

ABC transporter transmembrane region (ABC_membrane)

(18-288)

ABC transporter (ABC_tran)

(351-498)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

39.362

97.747

0.385

Multiple sequence alignment