Detailed information
Bioinformatically predicted
Overview
| Name | pilT | Type | Machinery gene |
| Locus tag | SYN_RS04035 | Genome accession | NC_007759 |
| Coordinates | 877241..878323 (+) | Length | 360 a.a. |
| NCBI ID | WP_011416763.1 | Uniprot ID | - |
| Organism | Syntrophus aciditrophicus SB | ||
| Function | type IV pilus retraction (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 872241..883323
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| SYN_RS15080 (SYN_00875) | - | 872537..873628 (-) | 1092 | WP_011416760.1 | response regulator transcription factor | - |
| SYN_RS04020 (SYN_00874) | - | 874181..875293 (+) | 1113 | WP_041585361.1 | MBL fold metallo-hydrolase | - |
| SYN_RS04025 (SYN_03159) | - | 875711..876913 (+) | 1203 | WP_041584694.1 | IS110 family transposase | - |
| SYN_RS04035 (SYN_00125) | pilT | 877241..878323 (+) | 1083 | WP_011416763.1 | type IV pilus twitching motility protein PilT | Machinery gene |
| SYN_RS04040 (SYN_00126) | - | 878414..879586 (+) | 1173 | WP_041584695.1 | type IV pilus twitching motility protein PilT | - |
| SYN_RS04045 (SYN_00127) | - | 879718..880233 (+) | 516 | WP_148202477.1 | response regulator | - |
| SYN_RS04055 (SYN_00128) | - | 880535..881674 (+) | 1140 | WP_148202478.1 | glycosyltransferase family 10 domain-containing protein | - |
| SYN_RS04060 (SYN_00129) | - | 881836..882792 (+) | 957 | WP_158302915.1 | mitochondrial fission ELM1 family protein | - |
Sequence
Protein
Download Length: 360 a.a. Molecular weight: 40119.28 Da Isoelectric Point: 6.7686
>NTDB_id=25290 SYN_RS04035 WP_011416763.1 877241..878323(+) (pilT) [Syntrophus aciditrophicus SB]
MAKIDAFFQLMHEQGASDLHLVSGQQPAIRMRGELERVKYNILDNDELKAMLYEITPEHKIKQFEETGDVDFAYEIPGLA
RYRANFFEQKFGVAAVFREIPSQILTCEQLGLPPVVSKLATLPRGLVLVTGPTGSGKSTTLAAIIDQANRLRKDHIITVE
DPIEFVHQSQSCIVNHREVGIHTKSFSAALRGALREDPDIILVGEMRDLETISLAVEAASTGHLVFGTLHTTSAAKTVDR
IIEVFPSSEQAQIRSTLADGLRAIIAQVLFKRIDRKGRCAALEILIANAAVRNLIRESKTFQIPSMIQTGKKYGMQLLDD
AIMELFNKGWISADEAYMKCNDKTKFRPLLKNPPTDFTEV
MAKIDAFFQLMHEQGASDLHLVSGQQPAIRMRGELERVKYNILDNDELKAMLYEITPEHKIKQFEETGDVDFAYEIPGLA
RYRANFFEQKFGVAAVFREIPSQILTCEQLGLPPVVSKLATLPRGLVLVTGPTGSGKSTTLAAIIDQANRLRKDHIITVE
DPIEFVHQSQSCIVNHREVGIHTKSFSAALRGALREDPDIILVGEMRDLETISLAVEAASTGHLVFGTLHTTSAAKTVDR
IIEVFPSSEQAQIRSTLADGLRAIIAQVLFKRIDRKGRCAALEILIANAAVRNLIRESKTFQIPSMIQTGKKYGMQLLDD
AIMELFNKGWISADEAYMKCNDKTKFRPLLKNPPTDFTEV
Nucleotide
Download Length: 1083 bp
>NTDB_id=25290 SYN_RS04035 WP_011416763.1 877241..878323(+) (pilT) [Syntrophus aciditrophicus SB]
ATGGCCAAAATCGATGCTTTTTTCCAGTTGATGCACGAACAGGGCGCATCGGACCTGCATCTCGTTTCCGGACAGCAGCC
TGCCATCCGGATGCGCGGTGAACTGGAGCGGGTGAAATATAATATTCTGGATAACGATGAGCTGAAGGCGATGCTCTATG
AAATCACGCCGGAACACAAAATCAAGCAGTTCGAGGAAACGGGGGATGTCGATTTTGCCTATGAAATTCCTGGTCTGGCC
CGTTACCGCGCCAATTTTTTCGAACAGAAGTTCGGTGTGGCAGCCGTTTTCCGGGAAATTCCCAGCCAGATCCTGACCTG
TGAGCAACTGGGACTGCCGCCCGTAGTTTCCAAACTGGCCACGCTGCCCCGGGGGCTGGTTCTGGTGACCGGACCAACAG
GCAGTGGAAAGTCAACGACCCTGGCAGCCATCATCGATCAAGCCAACCGCCTGCGGAAGGATCACATCATCACCGTCGAA
GATCCCATTGAATTCGTTCATCAGAGCCAGAGCTGCATCGTCAACCATCGGGAAGTCGGCATTCATACAAAGAGCTTTTC
CGCGGCCCTGAGAGGCGCCCTGCGTGAAGACCCGGACATCATACTGGTCGGGGAAATGCGGGATCTGGAAACCATCTCCC
TGGCTGTGGAAGCCGCCTCCACCGGCCATCTCGTTTTCGGGACCCTTCATACCACGAGTGCGGCGAAAACAGTTGACCGG
ATCATCGAGGTGTTTCCTTCCAGTGAGCAGGCCCAGATCCGATCCACCCTGGCAGACGGTCTGAGGGCGATCATCGCCCA
GGTGCTCTTCAAGAGGATCGACAGAAAGGGCCGATGCGCTGCTCTGGAAATCCTCATAGCCAATGCGGCCGTGCGCAATC
TGATCCGCGAGTCAAAGACCTTCCAGATTCCATCCATGATCCAGACGGGCAAGAAGTACGGGATGCAGCTTCTCGATGAC
GCCATCATGGAACTGTTCAATAAGGGATGGATCAGCGCCGATGAAGCCTACATGAAGTGCAACGACAAGACCAAATTCCG
GCCGTTGTTGAAAAACCCGCCGACAGATTTTACGGAGGTCTAA
ATGGCCAAAATCGATGCTTTTTTCCAGTTGATGCACGAACAGGGCGCATCGGACCTGCATCTCGTTTCCGGACAGCAGCC
TGCCATCCGGATGCGCGGTGAACTGGAGCGGGTGAAATATAATATTCTGGATAACGATGAGCTGAAGGCGATGCTCTATG
AAATCACGCCGGAACACAAAATCAAGCAGTTCGAGGAAACGGGGGATGTCGATTTTGCCTATGAAATTCCTGGTCTGGCC
CGTTACCGCGCCAATTTTTTCGAACAGAAGTTCGGTGTGGCAGCCGTTTTCCGGGAAATTCCCAGCCAGATCCTGACCTG
TGAGCAACTGGGACTGCCGCCCGTAGTTTCCAAACTGGCCACGCTGCCCCGGGGGCTGGTTCTGGTGACCGGACCAACAG
GCAGTGGAAAGTCAACGACCCTGGCAGCCATCATCGATCAAGCCAACCGCCTGCGGAAGGATCACATCATCACCGTCGAA
GATCCCATTGAATTCGTTCATCAGAGCCAGAGCTGCATCGTCAACCATCGGGAAGTCGGCATTCATACAAAGAGCTTTTC
CGCGGCCCTGAGAGGCGCCCTGCGTGAAGACCCGGACATCATACTGGTCGGGGAAATGCGGGATCTGGAAACCATCTCCC
TGGCTGTGGAAGCCGCCTCCACCGGCCATCTCGTTTTCGGGACCCTTCATACCACGAGTGCGGCGAAAACAGTTGACCGG
ATCATCGAGGTGTTTCCTTCCAGTGAGCAGGCCCAGATCCGATCCACCCTGGCAGACGGTCTGAGGGCGATCATCGCCCA
GGTGCTCTTCAAGAGGATCGACAGAAAGGGCCGATGCGCTGCTCTGGAAATCCTCATAGCCAATGCGGCCGTGCGCAATC
TGATCCGCGAGTCAAAGACCTTCCAGATTCCATCCATGATCCAGACGGGCAAGAAGTACGGGATGCAGCTTCTCGATGAC
GCCATCATGGAACTGTTCAATAAGGGATGGATCAGCGCCGATGAAGCCTACATGAAGTGCAACGACAAGACCAAATTCCG
GCCGTTGTTGAAAAACCCGCCGACAGATTTTACGGAGGTCTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilT | Pseudomonas stutzeri DSM 10701 |
55.988 |
92.778 |
0.519 |
| pilT | Pseudomonas aeruginosa PAK |
55.389 |
92.778 |
0.514 |
| pilT | Legionella pneumophila strain ERS1305867 |
55.891 |
91.944 |
0.514 |
| pilT | Legionella pneumophila strain Lp02 |
55.891 |
91.944 |
0.514 |
| pilT | Acinetobacter baylyi ADP1 |
56.151 |
88.056 |
0.494 |
| pilT | Acinetobacter baumannii strain A118 |
53.293 |
92.778 |
0.494 |
| pilT | Acinetobacter nosocomialis M2 |
53.293 |
92.778 |
0.494 |
| pilT | Acinetobacter baumannii D1279779 |
53.293 |
92.778 |
0.494 |
| pilT | Neisseria meningitidis 8013 |
53.517 |
90.833 |
0.486 |
| pilT | Neisseria gonorrhoeae MS11 |
53.211 |
90.833 |
0.483 |
| pilT | Vibrio cholerae O1 biovar El Tor strain E7946 |
51.682 |
90.833 |
0.469 |
| pilT | Vibrio cholerae strain A1552 |
51.682 |
90.833 |
0.469 |
| pilT | Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539 |
47.813 |
95.278 |
0.456 |
| pilU | Pseudomonas stutzeri DSM 10701 |
38.682 |
96.944 |
0.375 |
| pilU | Acinetobacter baylyi ADP1 |
36.769 |
99.722 |
0.367 |