Detailed information
Bioinformatically predicted
Overview
| Name | pilT | Type | Machinery gene |
| Locus tag | PCAR_RS11785 | Genome accession | NC_007498 |
| Coordinates | 2500710..2501834 (-) | Length | 374 a.a. |
| NCBI ID | WP_011341900.1 | Uniprot ID | Q3A2M0 |
| Organism | Syntrophotalea carbinolica DSM 2380 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 2495710..2506834
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| PCAR_RS11770 (Pcar_2145) | - | 2496138..2497559 (-) | 1422 | WP_041531366.1 | sigma-54-dependent transcriptional regulator | - |
| PCAR_RS11775 (Pcar_2146) | - | 2497688..2499280 (-) | 1593 | WP_158447424.1 | two-component system sensor histidine kinase NtrB | - |
| PCAR_RS11780 (Pcar_2147) | - | 2499367..2500584 (-) | 1218 | WP_011341899.1 | type II secretion system F family protein | - |
| PCAR_RS11785 (Pcar_2148) | pilT | 2500710..2501834 (-) | 1125 | WP_011341900.1 | type IV pilus twitching motility protein PilT | Machinery gene |
| PCAR_RS11790 (Pcar_2149) | pilB | 2501930..2503630 (-) | 1701 | WP_011341901.1 | type IV-A pilus assembly ATPase PilB | - |
| PCAR_RS11795 (Pcar_2150) | - | 2503743..2504594 (-) | 852 | WP_011341902.1 | shikimate dehydrogenase | - |
| PCAR_RS11800 (Pcar_2151) | - | 2504591..2505583 (-) | 993 | WP_011341903.1 | bifunctional riboflavin kinase/FAD synthetase | - |
Sequence
Protein
Download Length: 374 a.a. Molecular weight: 41981.63 Da Isoelectric Point: 8.0837
>NTDB_id=24862 PCAR_RS11785 WP_011341900.1 2500710..2501834(-) (pilT) [Syntrophotalea carbinolica DSM 2380]
MQEPEQQVKLGIRELLFKMVEMGASDLHITTGAPPQVRVDGQVTGLKHPPLQPAETKQLCYSILTDAQKRKFEEENELDL
SFGVKGLARFRGNIFLQRGALAGAFRMIPYKFRSFEELGLPPVVKDISRKPRGLILVTGPTGSGKSTTLASIIDAINMER
HDHIITIEDPIEYIHPHKNCLVNQREVGSDTHSFKKALKYILRQDPDVVLLGELRDLETIEAALTIAETGHLCFATLHTN
SCVQTINRIVDVFPTNQQAQVRTQLSFVLEGVLSQNLLPRSGGQGRVLCLEVMIPNAAIRALIRDDKIHQIYSQMQMGQE
RYGMQTMNQSLFMLAYRKMISVDTALTRSPEPDELKQMLANPNAILKRQLHVGQ
MQEPEQQVKLGIRELLFKMVEMGASDLHITTGAPPQVRVDGQVTGLKHPPLQPAETKQLCYSILTDAQKRKFEEENELDL
SFGVKGLARFRGNIFLQRGALAGAFRMIPYKFRSFEELGLPPVVKDISRKPRGLILVTGPTGSGKSTTLASIIDAINMER
HDHIITIEDPIEYIHPHKNCLVNQREVGSDTHSFKKALKYILRQDPDVVLLGELRDLETIEAALTIAETGHLCFATLHTN
SCVQTINRIVDVFPTNQQAQVRTQLSFVLEGVLSQNLLPRSGGQGRVLCLEVMIPNAAIRALIRDDKIHQIYSQMQMGQE
RYGMQTMNQSLFMLAYRKMISVDTALTRSPEPDELKQMLANPNAILKRQLHVGQ
Nucleotide
Download Length: 1125 bp
>NTDB_id=24862 PCAR_RS11785 WP_011341900.1 2500710..2501834(-) (pilT) [Syntrophotalea carbinolica DSM 2380]
ATGCAGGAACCGGAACAGCAGGTTAAACTCGGAATTCGTGAGCTTCTGTTTAAAATGGTTGAGATGGGGGCCTCCGACCT
TCATATCACTACCGGAGCTCCTCCTCAGGTCAGAGTCGATGGTCAGGTTACCGGGCTGAAGCATCCTCCTTTGCAGCCGG
CCGAAACCAAGCAACTCTGTTACAGCATTTTGACCGATGCGCAAAAACGCAAGTTCGAAGAGGAGAACGAACTCGATCTT
TCCTTTGGCGTCAAGGGCCTGGCGCGTTTTCGCGGCAATATCTTTCTACAGCGCGGGGCCTTGGCCGGTGCCTTCCGGAT
GATTCCGTACAAGTTTCGCAGTTTTGAGGAACTTGGACTGCCGCCGGTCGTCAAGGATATTTCGCGCAAACCTCGTGGCT
TGATCCTGGTCACCGGCCCGACCGGCAGCGGCAAGTCCACCACCCTGGCATCCATTATCGACGCCATCAACATGGAACGT
CACGACCACATCATTACCATCGAAGATCCGATCGAATATATTCACCCACATAAGAACTGCCTGGTAAACCAGCGCGAGGT
CGGGTCCGATACGCACTCCTTTAAAAAGGCCCTGAAATATATTCTGCGCCAGGATCCGGATGTGGTGTTGCTCGGCGAGT
TGCGCGATCTCGAGACCATCGAGGCAGCTTTGACCATTGCCGAAACCGGGCATCTTTGTTTTGCCACGCTGCATACCAAT
TCCTGTGTACAGACCATCAACCGTATCGTTGACGTTTTTCCCACCAATCAACAGGCCCAGGTCCGCACCCAGCTGTCCTT
TGTGCTCGAAGGGGTTTTGTCGCAGAACCTGTTGCCCCGATCCGGAGGCCAGGGGCGTGTGCTGTGCCTTGAGGTCATGA
TACCTAATGCGGCCATCCGGGCGCTGATTCGCGACGACAAGATCCACCAGATCTATTCCCAGATGCAGATGGGTCAGGAA
CGTTACGGTATGCAGACCATGAATCAATCGTTGTTCATGCTCGCCTATCGTAAAATGATTTCGGTGGATACCGCTTTGAC
GCGCTCCCCGGAGCCGGATGAACTCAAGCAGATGCTGGCCAATCCCAATGCCATTTTGAAGCGGCAGCTTCATGTCGGTC
AGTAG
ATGCAGGAACCGGAACAGCAGGTTAAACTCGGAATTCGTGAGCTTCTGTTTAAAATGGTTGAGATGGGGGCCTCCGACCT
TCATATCACTACCGGAGCTCCTCCTCAGGTCAGAGTCGATGGTCAGGTTACCGGGCTGAAGCATCCTCCTTTGCAGCCGG
CCGAAACCAAGCAACTCTGTTACAGCATTTTGACCGATGCGCAAAAACGCAAGTTCGAAGAGGAGAACGAACTCGATCTT
TCCTTTGGCGTCAAGGGCCTGGCGCGTTTTCGCGGCAATATCTTTCTACAGCGCGGGGCCTTGGCCGGTGCCTTCCGGAT
GATTCCGTACAAGTTTCGCAGTTTTGAGGAACTTGGACTGCCGCCGGTCGTCAAGGATATTTCGCGCAAACCTCGTGGCT
TGATCCTGGTCACCGGCCCGACCGGCAGCGGCAAGTCCACCACCCTGGCATCCATTATCGACGCCATCAACATGGAACGT
CACGACCACATCATTACCATCGAAGATCCGATCGAATATATTCACCCACATAAGAACTGCCTGGTAAACCAGCGCGAGGT
CGGGTCCGATACGCACTCCTTTAAAAAGGCCCTGAAATATATTCTGCGCCAGGATCCGGATGTGGTGTTGCTCGGCGAGT
TGCGCGATCTCGAGACCATCGAGGCAGCTTTGACCATTGCCGAAACCGGGCATCTTTGTTTTGCCACGCTGCATACCAAT
TCCTGTGTACAGACCATCAACCGTATCGTTGACGTTTTTCCCACCAATCAACAGGCCCAGGTCCGCACCCAGCTGTCCTT
TGTGCTCGAAGGGGTTTTGTCGCAGAACCTGTTGCCCCGATCCGGAGGCCAGGGGCGTGTGCTGTGCCTTGAGGTCATGA
TACCTAATGCGGCCATCCGGGCGCTGATTCGCGACGACAAGATCCACCAGATCTATTCCCAGATGCAGATGGGTCAGGAA
CGTTACGGTATGCAGACCATGAATCAATCGTTGTTCATGCTCGCCTATCGTAAAATGATTTCGGTGGATACCGCTTTGAC
GCGCTCCCCGGAGCCGGATGAACTCAAGCAGATGCTGGCCAATCCCAATGCCATTTTGAAGCGGCAGCTTCATGTCGGTC
AGTAG
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilT | Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539 |
51.831 |
94.92 |
0.492 |
| pilT | Legionella pneumophila strain Lp02 |
53.274 |
89.84 |
0.479 |
| pilT | Legionella pneumophila strain ERS1305867 |
53.274 |
89.84 |
0.479 |
| pilT | Acinetobacter baylyi ADP1 |
52.035 |
91.979 |
0.479 |
| pilT | Acinetobacter baumannii strain A118 |
51.734 |
92.513 |
0.479 |
| pilT | Acinetobacter baumannii D1279779 |
51.734 |
92.513 |
0.479 |
| pilT | Acinetobacter nosocomialis M2 |
51.734 |
92.513 |
0.479 |
| pilT | Pseudomonas aeruginosa PAK |
51.156 |
92.513 |
0.473 |
| pilT | Pseudomonas stutzeri DSM 10701 |
50.289 |
92.513 |
0.465 |
| pilT | Vibrio cholerae O1 biovar El Tor strain E7946 |
49.849 |
88.503 |
0.441 |
| pilT | Vibrio cholerae strain A1552 |
49.849 |
88.503 |
0.441 |
| pilT | Neisseria meningitidis 8013 |
46.821 |
92.513 |
0.433 |
| pilT | Neisseria gonorrhoeae MS11 |
46.377 |
92.246 |
0.428 |
| pilU | Vibrio cholerae strain A1552 |
41.954 |
93.048 |
0.39 |
| pilU | Acinetobacter baylyi ADP1 |
41.379 |
93.048 |
0.385 |
| pilU | Pseudomonas stutzeri DSM 10701 |
41.329 |
92.513 |
0.382 |