Detailed information    

insolico Bioinformatically predicted

Overview

Name   subA/fin   Type   Machinery gene
Locus tag   C7M29_RS04595 Genome accession   NZ_CP028217
Coordinates   890456..890686 (-) Length   76 a.a.
NCBI ID   WP_003243417.1    Uniprot ID   A0ABU0VCT2
Organism   Bacillus subtilis strain SRCM102751     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 885456..895686
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C7M29_RS04585 (C7M29_00906) spoVT 886181..886717 (-) 537 WP_003218365.1 stage V sporulation protein T -
  C7M29_RS04590 (C7M29_00907) mfd 886853..890386 (-) 3534 WP_144530797.1 transcription-repair coupling factor -
  C7M29_RS04595 (C7M29_00908) subA/fin 890456..890686 (-) 231 WP_003243417.1 anti-sigma-F factor Fin Machinery gene
  C7M29_RS04600 (C7M29_00909) pth 890746..891312 (-) 567 WP_003226727.1 aminoacyl-tRNA hydrolase -
  C7M29_RS04605 (C7M29_00910) rplYB 891419..892033 (-) 615 WP_161476522.1 50S ribosomal protein L25/general stress protein Ctc -
  C7M29_RS04610 (C7M29_00911) prsS 892118..893071 (-) 954 WP_003218353.1 ribose-phosphate diphosphokinase -
  C7M29_RS04615 (C7M29_00912) glmU 893094..894464 (-) 1371 WP_015382564.1 bifunctional UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase GlmU -
  C7M29_RS04620 (C7M29_00913) spoVG 894657..894950 (-) 294 WP_003218346.1 septation regulator SpoVG -
  C7M29_RS04625 (C7M29_00914) ridA 895145..895522 (-) 378 WP_003226738.1 2-iminobutanoate/2-iminopropanoate deaminase -

Sequence

Protein


Download         Length: 76 a.a.        Molecular weight: 8847.81 Da        Isoelectric Point: 5.3895

>NTDB_id=240316 C7M29_RS04595 WP_003243417.1 890456..890686(-) (subA/fin) [Bacillus subtilis strain SRCM102751]
MALHYYCRHCGVKVGSLESSMVSTDSLGFQHLTNEERNDMISYKENGDVHVLTICEDCQEALDRNPHYHEYHTFIQ

Nucleotide


Download         Length: 231 bp        

>NTDB_id=240316 C7M29_RS04595 WP_003243417.1 890456..890686(-) (subA/fin) [Bacillus subtilis strain SRCM102751]
ATGGCTTTGCATTATTATTGTCGTCATTGCGGAGTGAAAGTAGGCAGTCTCGAATCTTCAATGGTATCGACAGACTCACT
TGGATTTCAGCACTTAACAAATGAGGAAAGAAACGATATGATTTCTTATAAAGAAAATGGAGATGTCCATGTTTTGACGA
TATGTGAAGACTGCCAAGAGGCGCTTGACCGAAATCCGCATTACCACGAATATCACACATTTATTCAATAA

Domains

Predicted by InterProScan.

Anti-sigma-F factor Fin (Fin)

(1-76)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  subA/fin Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment