Detailed information
Bioinformatically predicted
Overview
| Name | pilT | Type | Machinery gene |
| Locus tag | XM38_RS04195 | Genome accession | NZ_CP021983 |
| Coordinates | 894035..895168 (-) | Length | 377 a.a. |
| NCBI ID | WP_080809454.1 | Uniprot ID | A0A1Z3HI07 |
| Organism | Halomicronema hongdechloris C2206 | ||
| Function | type IV pilus retraction (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 889035..900168
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| XM38_RS04180 (XM38_008710) | - | 889540..890649 (+) | 1110 | WP_187329270.1 | YdcF family protein | - |
| XM38_RS04185 (XM38_008720) | - | 890708..892456 (+) | 1749 | WP_080809459.1 | ABC transporter ATP-binding protein | - |
| XM38_RS04190 (XM38_008730) | - | 892450..893670 (-) | 1221 | WP_080809456.1 | type II secretion system F family protein | - |
| XM38_RS04195 (XM38_008740) | pilT | 894035..895168 (-) | 1134 | WP_080809454.1 | type IV pilus twitching motility protein PilT | Machinery gene |
| XM38_RS04200 (XM38_008750) | pilB/pilB1 | 895273..897285 (-) | 2013 | WP_080809451.1 | GspE/PulE family protein | Machinery gene |
| XM38_RS04205 (XM38_008760) | grpE | 897707..898483 (+) | 777 | WP_080809449.1 | nucleotide exchange factor GrpE | - |
Sequence
Protein
Download Length: 377 a.a. Molecular weight: 41296.56 Da Isoelectric Point: 6.8432
>NTDB_id=235599 XM38_RS04195 WP_080809454.1 894035..895168(-) (pilT) [Halomicronema hongdechloris C2206]
MDLMIEDLMEEVVERGGSDLHLSAGLPPYIRINGKLTPTDHEPLSPEGCQRLIFSMLNNTQRKNLEQNWELDCSYGVRGL
ARFRVNVYKDRGTYAACLRALSSKIPSMEVLGLPNIVRELSEKPRGLILVTGPTGSGKSTTLASMINNINMSRPEHILTI
EDPIEFVYEPIKSLVHQRQIGEDTKSFANALRAALREDPDVILVGEMRDLETISLAITAAETGHLVFGTLHTSSAAQTVD
RMVDVFPPEQQQQIRVQLSNSLVAVLSQTLMPKLNPKPGEFGRVMAQEIMLVTPAIANLIREGKTAQIYGAIQTGGKLGM
HTLEMVLAKLYKEGSISFEAAMSKTSRPDELQRLIGTGPAAAQPPGSRPGGYAGTRR
MDLMIEDLMEEVVERGGSDLHLSAGLPPYIRINGKLTPTDHEPLSPEGCQRLIFSMLNNTQRKNLEQNWELDCSYGVRGL
ARFRVNVYKDRGTYAACLRALSSKIPSMEVLGLPNIVRELSEKPRGLILVTGPTGSGKSTTLASMINNINMSRPEHILTI
EDPIEFVYEPIKSLVHQRQIGEDTKSFANALRAALREDPDVILVGEMRDLETISLAITAAETGHLVFGTLHTSSAAQTVD
RMVDVFPPEQQQQIRVQLSNSLVAVLSQTLMPKLNPKPGEFGRVMAQEIMLVTPAIANLIREGKTAQIYGAIQTGGKLGM
HTLEMVLAKLYKEGSISFEAAMSKTSRPDELQRLIGTGPAAAQPPGSRPGGYAGTRR
Nucleotide
Download Length: 1134 bp
>NTDB_id=235599 XM38_RS04195 WP_080809454.1 894035..895168(-) (pilT) [Halomicronema hongdechloris C2206]
ATGGATTTAATGATTGAAGACTTAATGGAAGAGGTCGTTGAGAGAGGCGGATCAGACCTACACCTGTCAGCAGGATTGCC
CCCCTACATTCGAATCAACGGCAAGCTGACCCCCACCGACCATGAACCCCTTTCCCCAGAAGGGTGTCAGCGCCTTATCT
TCAGCATGCTCAACAATACCCAGCGCAAGAACCTAGAGCAAAATTGGGAGCTGGACTGTTCCTATGGGGTACGGGGTTTA
GCGCGTTTTCGGGTCAATGTCTACAAGGATCGAGGCACCTATGCAGCTTGTTTACGGGCCCTCAGCTCCAAAATTCCCAG
CATGGAAGTTTTAGGCCTGCCCAATATCGTCCGAGAACTCTCAGAAAAGCCCAGGGGCTTAATCTTGGTGACTGGCCCCA
CCGGATCGGGGAAATCCACCACTCTGGCATCCATGATTAACAACATCAACATGTCTCGGCCAGAGCACATTCTCACCATT
GAAGATCCCATCGAATTTGTCTACGAGCCCATTAAGAGCTTGGTACACCAACGGCAGATCGGTGAAGACACCAAGAGCTT
CGCCAACGCTCTGCGGGCAGCCCTGCGGGAAGACCCCGATGTCATCCTGGTGGGTGAAATGCGGGATTTAGAGACTATCT
CCCTGGCGATCACCGCTGCTGAAACGGGCCACTTAGTCTTTGGCACTCTTCATACCAGCTCAGCCGCCCAAACCGTTGAC
CGCATGGTGGATGTATTTCCTCCAGAGCAACAACAGCAAATTCGGGTGCAGTTGTCCAACTCCTTGGTGGCCGTCTTGAG
TCAGACACTAATGCCCAAGCTGAACCCGAAACCCGGTGAGTTTGGCCGGGTGATGGCCCAGGAAATCATGCTGGTTACCC
CAGCCATTGCCAACCTGATTCGAGAAGGTAAGACAGCCCAGATTTATGGAGCGATTCAGACGGGTGGTAAGTTGGGCATG
CATACTCTAGAAATGGTGCTAGCCAAGCTCTACAAGGAGGGAAGCATCTCCTTTGAGGCCGCTATGTCTAAGACCTCTCG
CCCAGACGAACTCCAGCGTCTCATTGGCACTGGCCCTGCTGCGGCCCAGCCCCCTGGGAGTCGACCTGGAGGCTATGCCG
GCACCCGCCGTTAA
ATGGATTTAATGATTGAAGACTTAATGGAAGAGGTCGTTGAGAGAGGCGGATCAGACCTACACCTGTCAGCAGGATTGCC
CCCCTACATTCGAATCAACGGCAAGCTGACCCCCACCGACCATGAACCCCTTTCCCCAGAAGGGTGTCAGCGCCTTATCT
TCAGCATGCTCAACAATACCCAGCGCAAGAACCTAGAGCAAAATTGGGAGCTGGACTGTTCCTATGGGGTACGGGGTTTA
GCGCGTTTTCGGGTCAATGTCTACAAGGATCGAGGCACCTATGCAGCTTGTTTACGGGCCCTCAGCTCCAAAATTCCCAG
CATGGAAGTTTTAGGCCTGCCCAATATCGTCCGAGAACTCTCAGAAAAGCCCAGGGGCTTAATCTTGGTGACTGGCCCCA
CCGGATCGGGGAAATCCACCACTCTGGCATCCATGATTAACAACATCAACATGTCTCGGCCAGAGCACATTCTCACCATT
GAAGATCCCATCGAATTTGTCTACGAGCCCATTAAGAGCTTGGTACACCAACGGCAGATCGGTGAAGACACCAAGAGCTT
CGCCAACGCTCTGCGGGCAGCCCTGCGGGAAGACCCCGATGTCATCCTGGTGGGTGAAATGCGGGATTTAGAGACTATCT
CCCTGGCGATCACCGCTGCTGAAACGGGCCACTTAGTCTTTGGCACTCTTCATACCAGCTCAGCCGCCCAAACCGTTGAC
CGCATGGTGGATGTATTTCCTCCAGAGCAACAACAGCAAATTCGGGTGCAGTTGTCCAACTCCTTGGTGGCCGTCTTGAG
TCAGACACTAATGCCCAAGCTGAACCCGAAACCCGGTGAGTTTGGCCGGGTGATGGCCCAGGAAATCATGCTGGTTACCC
CAGCCATTGCCAACCTGATTCGAGAAGGTAAGACAGCCCAGATTTATGGAGCGATTCAGACGGGTGGTAAGTTGGGCATG
CATACTCTAGAAATGGTGCTAGCCAAGCTCTACAAGGAGGGAAGCATCTCCTTTGAGGCCGCTATGTCTAAGACCTCTCG
CCCAGACGAACTCCAGCGTCTCATTGGCACTGGCCCTGCTGCGGCCCAGCCCCCTGGGAGTCGACCTGGAGGCTATGCCG
GCACCCGCCGTTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilT | Pseudomonas aeruginosa PAK |
55.043 |
92.042 |
0.507 |
| pilT | Pseudomonas stutzeri DSM 10701 |
53.602 |
92.042 |
0.493 |
| pilT | Legionella pneumophila strain Lp02 |
53.333 |
91.512 |
0.488 |
| pilT | Legionella pneumophila strain ERS1305867 |
53.333 |
91.512 |
0.488 |
| pilT | Acinetobacter baylyi ADP1 |
52.738 |
92.042 |
0.485 |
| pilT | Acinetobacter baumannii strain A118 |
52.161 |
92.042 |
0.48 |
| pilT | Acinetobacter nosocomialis M2 |
52.161 |
92.042 |
0.48 |
| pilT | Acinetobacter baumannii D1279779 |
52.161 |
92.042 |
0.48 |
| pilT | Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539 |
50.286 |
92.838 |
0.467 |
| pilT | Neisseria meningitidis 8013 |
50.143 |
92.573 |
0.464 |
| pilT | Neisseria gonorrhoeae MS11 |
51.622 |
89.92 |
0.464 |
| pilT | Vibrio cholerae strain A1552 |
50.882 |
90.186 |
0.459 |
| pilT | Vibrio cholerae O1 biovar El Tor strain E7946 |
50.882 |
90.186 |
0.459 |
| pilU | Pseudomonas stutzeri DSM 10701 |
39.548 |
93.899 |
0.371 |
| pilU | Acinetobacter baylyi ADP1 |
38.082 |
96.817 |
0.369 |