Detailed information
Bioinformatically predicted
Overview
| Name | pilT | Type | Machinery gene |
| Locus tag | RB_RS26585 | Genome accession | NC_005027 |
| Coordinates | 6884826..6885932 (+) | Length | 368 a.a. |
| NCBI ID | WP_007329383.1 | Uniprot ID | Q7UI41 |
| Organism | Rhodopirellula baltica SH | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 6879826..6890932
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| RB_RS26575 (RB12766) | - | 6880940..6882055 (+) | 1116 | WP_007329385.1 | EAL domain-containing protein | - |
| RB_RS26580 (RB12768) | - | 6882579..6884336 (+) | 1758 | WP_164922562.1 | GspE/PulE family protein | - |
| RB_RS26585 (RB12773) | pilT | 6884826..6885932 (+) | 1107 | WP_007329383.1 | type IV pilus twitching motility protein PilT | Machinery gene |
| RB_RS26590 (RB12774) | - | 6886048..6887763 (+) | 1716 | WP_007332509.1 | GspE/PulE family protein | - |
| RB_RS26595 (RB12778) | - | 6887872..6888231 (+) | 360 | WP_011123903.1 | four helix bundle protein | - |
| RB_RS26600 (RB12781) | - | 6888383..6889822 (+) | 1440 | WP_007329380.1 | type II secretion system F family protein | - |
Sequence
Protein
Download Length: 368 a.a. Molecular weight: 40556.53 Da Isoelectric Point: 6.7277
>NTDB_id=23011 RB_RS26585 WP_007329383.1 6884826..6885932(+) (pilT) [Rhodopirellula baltica SH]
MATVLIDKLLQAAVKQGVSDIHIVVGQPPVFRLHGRMRKLETKTLEGEDSVALMKSITPERCQRELQETGSTDFGFAFGD
LARFRVSVFKQRGFISMVLRQIPNDKLTPEQLGLPEAVVKMVHRPRGLFLVTGPTGSGKSTTLASLINLLNETIDHHIIT
IEDPIEFYHEHKESTINQREVGVDVPSFSEAIRRALRQDPDVILVGELRDLETIEAAISAAETGHVVFGTLHTNSAQGTV
NRIIDAFPGNLQDQIRTQLASTLIGVVAQTLLPKIGGGRCAAYEVLNVTPGIANLIRENKTFRINSSMQTGAKFGMQLMD
DALFNHWKGDRVSVEDVLAKAHRPDDLAKRIVQARQGLGDEPIPIKED
MATVLIDKLLQAAVKQGVSDIHIVVGQPPVFRLHGRMRKLETKTLEGEDSVALMKSITPERCQRELQETGSTDFGFAFGD
LARFRVSVFKQRGFISMVLRQIPNDKLTPEQLGLPEAVVKMVHRPRGLFLVTGPTGSGKSTTLASLINLLNETIDHHIIT
IEDPIEFYHEHKESTINQREVGVDVPSFSEAIRRALRQDPDVILVGELRDLETIEAAISAAETGHVVFGTLHTNSAQGTV
NRIIDAFPGNLQDQIRTQLASTLIGVVAQTLLPKIGGGRCAAYEVLNVTPGIANLIRENKTFRINSSMQTGAKFGMQLMD
DALFNHWKGDRVSVEDVLAKAHRPDDLAKRIVQARQGLGDEPIPIKED
Nucleotide
Download Length: 1107 bp
>NTDB_id=23011 RB_RS26585 WP_007329383.1 6884826..6885932(+) (pilT) [Rhodopirellula baltica SH]
ATGGCCACCGTGCTGATCGACAAACTGCTGCAAGCTGCTGTGAAGCAGGGCGTGAGCGACATCCATATTGTTGTCGGCCA
GCCGCCCGTGTTTCGATTGCACGGCCGCATGCGGAAGCTGGAAACCAAGACGCTCGAAGGCGAAGATTCTGTCGCGTTGA
TGAAATCGATCACGCCGGAACGCTGTCAGCGTGAACTGCAAGAGACAGGCTCGACCGACTTCGGGTTCGCGTTCGGCGAT
TTGGCTCGTTTCCGAGTCTCTGTCTTCAAGCAGCGTGGCTTCATTTCGATGGTGCTGCGTCAGATCCCCAATGACAAATT
GACGCCCGAGCAACTCGGCCTGCCCGAGGCTGTCGTCAAAATGGTCCACCGCCCTCGTGGGTTGTTCCTGGTGACGGGAC
CAACGGGGTCAGGGAAATCGACGACGCTGGCATCGTTGATCAACTTGCTCAACGAAACCATTGACCACCACATCATCACG
ATCGAAGACCCGATCGAGTTTTATCACGAACACAAAGAGTCGACGATCAACCAGCGGGAAGTCGGCGTCGATGTGCCGAG
TTTCTCCGAAGCGATCCGTCGCGCACTGCGACAAGACCCTGACGTGATTCTGGTCGGCGAGCTTCGCGACCTCGAGACCA
TCGAAGCCGCCATCAGTGCGGCTGAAACGGGACACGTCGTGTTTGGCACCCTGCACACCAACAGTGCTCAGGGCACGGTC
AACCGGATCATCGACGCGTTCCCCGGCAACCTACAGGATCAAATTCGGACGCAGCTCGCATCCACCCTGATCGGTGTGGT
CGCGCAGACATTGTTGCCAAAGATCGGTGGCGGTCGTTGTGCCGCTTACGAAGTGCTGAACGTGACGCCCGGCATCGCCA
ACCTGATTCGCGAAAACAAAACGTTCCGGATCAACTCATCGATGCAAACCGGTGCCAAGTTCGGCATGCAGTTGATGGAC
GACGCGTTGTTCAATCACTGGAAAGGCGACCGAGTCTCGGTGGAAGATGTGTTGGCAAAAGCCCACCGTCCCGACGACTT
GGCCAAACGAATCGTTCAAGCAAGACAAGGTCTGGGCGACGAGCCCATTCCGATTAAGGAAGATTAG
ATGGCCACCGTGCTGATCGACAAACTGCTGCAAGCTGCTGTGAAGCAGGGCGTGAGCGACATCCATATTGTTGTCGGCCA
GCCGCCCGTGTTTCGATTGCACGGCCGCATGCGGAAGCTGGAAACCAAGACGCTCGAAGGCGAAGATTCTGTCGCGTTGA
TGAAATCGATCACGCCGGAACGCTGTCAGCGTGAACTGCAAGAGACAGGCTCGACCGACTTCGGGTTCGCGTTCGGCGAT
TTGGCTCGTTTCCGAGTCTCTGTCTTCAAGCAGCGTGGCTTCATTTCGATGGTGCTGCGTCAGATCCCCAATGACAAATT
GACGCCCGAGCAACTCGGCCTGCCCGAGGCTGTCGTCAAAATGGTCCACCGCCCTCGTGGGTTGTTCCTGGTGACGGGAC
CAACGGGGTCAGGGAAATCGACGACGCTGGCATCGTTGATCAACTTGCTCAACGAAACCATTGACCACCACATCATCACG
ATCGAAGACCCGATCGAGTTTTATCACGAACACAAAGAGTCGACGATCAACCAGCGGGAAGTCGGCGTCGATGTGCCGAG
TTTCTCCGAAGCGATCCGTCGCGCACTGCGACAAGACCCTGACGTGATTCTGGTCGGCGAGCTTCGCGACCTCGAGACCA
TCGAAGCCGCCATCAGTGCGGCTGAAACGGGACACGTCGTGTTTGGCACCCTGCACACCAACAGTGCTCAGGGCACGGTC
AACCGGATCATCGACGCGTTCCCCGGCAACCTACAGGATCAAATTCGGACGCAGCTCGCATCCACCCTGATCGGTGTGGT
CGCGCAGACATTGTTGCCAAAGATCGGTGGCGGTCGTTGTGCCGCTTACGAAGTGCTGAACGTGACGCCCGGCATCGCCA
ACCTGATTCGCGAAAACAAAACGTTCCGGATCAACTCATCGATGCAAACCGGTGCCAAGTTCGGCATGCAGTTGATGGAC
GACGCGTTGTTCAATCACTGGAAAGGCGACCGAGTCTCGGTGGAAGATGTGTTGGCAAAAGCCCACCGTCCCGACGACTT
GGCCAAACGAATCGTTCAAGCAAGACAAGGTCTGGGCGACGAGCCCATTCCGATTAAGGAAGATTAG
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilT | Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539 |
51.268 |
96.467 |
0.495 |
| pilT | Pseudomonas aeruginosa PAK |
48.538 |
92.935 |
0.451 |
| pilT | Pseudomonas stutzeri DSM 10701 |
48.246 |
92.935 |
0.448 |
| pilT | Legionella pneumophila strain Lp02 |
51.572 |
86.413 |
0.446 |
| pilT | Legionella pneumophila strain ERS1305867 |
51.572 |
86.413 |
0.446 |
| pilT | Acinetobacter baylyi ADP1 |
50 |
86.413 |
0.432 |
| pilT | Acinetobacter nosocomialis M2 |
50 |
86.413 |
0.432 |
| pilT | Acinetobacter baumannii D1279779 |
50 |
86.413 |
0.432 |
| pilT | Acinetobacter baumannii strain A118 |
50 |
86.413 |
0.432 |
| pilT | Vibrio cholerae O1 biovar El Tor strain E7946 |
50.159 |
85.598 |
0.429 |
| pilT | Vibrio cholerae strain A1552 |
50.159 |
85.598 |
0.429 |
| pilT | Neisseria meningitidis 8013 |
47.649 |
86.685 |
0.413 |
| pilT | Neisseria gonorrhoeae MS11 |
47.335 |
86.685 |
0.41 |
| pilU | Acinetobacter baylyi ADP1 |
39.655 |
94.565 |
0.375 |
| pilU | Pseudomonas stutzeri DSM 10701 |
40.233 |
93.207 |
0.375 |
| pilU | Vibrio cholerae strain A1552 |
39.65 |
93.207 |
0.37 |