Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilE   Type   Machinery gene
Locus tag   AB895_RS05755 Genome accession   NZ_CP021342
Coordinates   1203439..1203900 (-) Length   153 a.a.
NCBI ID   WP_038349724.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain B8342     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1198439..1208900
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB895_RS05730 (AB895_1163) - 1198800..1199183 (+) 384 WP_000090000.1 RidA family protein -
  AB895_RS05735 (AB895_1164) - 1199392..1199586 (+) 195 WP_000289091.1 bacterioferritin-associated ferredoxin -
  AB895_RS05740 (AB895_1165) bfr 1199832..1200296 (+) 465 WP_000678121.1 bacterioferritin -
  AB895_RS05745 (AB895_1166) - 1200336..1201964 (-) 1629 WP_049594551.1 PglL family O-oligosaccharyltransferase -
  AB895_RS05750 (AB895_1167) - 1202072..1203382 (-) 1311 WP_038349723.1 O-antigen ligase -
  AB895_RS05755 (AB895_1168) pilE 1203439..1203900 (-) 462 WP_038349724.1 pilin Machinery gene
  AB895_RS05760 (AB895_1170) - 1204243..1204803 (-) 561 WP_038349725.1 TPM domain-containing protein -
  AB895_RS05765 (AB895_1171) - 1204797..1205882 (-) 1086 WP_038349726.1 YgcG family protein -
  AB895_RS05770 (AB895_1172) - 1205904..1206494 (-) 591 WP_000846931.1 LemA family protein -
  AB895_RS05775 (AB895_1173) - 1206625..1207512 (-) 888 WP_032025035.1 metal-dependent hydrolase -

Sequence

Protein


Download         Length: 153 a.a.        Molecular weight: 15652.91 Da        Isoelectric Point: 7.5868

>NTDB_id=230041 AB895_RS05755 WP_038349724.1 1203439..1203900(-) (pilE) [Acinetobacter baumannii strain B8342]
MNAQKGFTLIELMIVVAIIGILAAIAIPAYQDYIARSQVSEAMELASGLKGAVAETFSQDATCPTNGTNGIATATDINGK
YVASVTTAGTAVASGGCTITAKMRATGVSKGIQNGELILTLSNADKGSNVWSCTSTGPNKIEQKYLPKSCISS

Nucleotide


Download         Length: 462 bp        

>NTDB_id=230041 AB895_RS05755 WP_038349724.1 1203439..1203900(-) (pilE) [Acinetobacter baumannii strain B8342]
ATGAATGCACAAAAAGGTTTTACATTAATCGAACTTATGATCGTGGTTGCCATTATCGGTATTTTGGCGGCAATTGCGAT
TCCTGCGTATCAAGACTATATCGCTCGTTCTCAAGTTAGTGAAGCTATGGAGTTAGCTAGTGGATTGAAGGGAGCTGTTG
CAGAGACTTTTAGTCAAGATGCTACTTGCCCAACAAATGGTACTAATGGAATTGCTACTGCTACTGATATTAATGGTAAA
TATGTTGCTTCTGTAACCACGGCAGGTACCGCTGTTGCCTCAGGTGGATGTACAATTACTGCAAAAATGCGGGCAACTGG
AGTTTCAAAAGGTATTCAAAATGGAGAGCTTATTCTAACTCTTAGTAATGCAGATAAAGGTTCAAATGTGTGGAGTTGTA
CTTCAACTGGTCCAAACAAAATTGAACAAAAGTACTTACCTAAATCATGTATTTCTTCATAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(1-26)

Pilin (bacterial filament) (Pilin)

(35-150)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilE Neisseria gonorrhoeae strain FA1090

49.068

100

0.516
  pilE Neisseria gonorrhoeae MS11

44.444

100

0.471
  comP Acinetobacter baylyi ADP1

40.491

100

0.431
  pilA2 Legionella pneumophila str. Paris

43.046

98.693

0.425
  pilA2 Legionella pneumophila strain ERS1305867

43.046

98.693

0.425
  pilA Ralstonia pseudosolanacearum GMI1000

39.752

100

0.418
  pilA Acinetobacter nosocomialis M2

52.459

79.739

0.418
  pilA/pilAI Pseudomonas stutzeri DSM 10701

42.384

98.693

0.418
  pilA Acinetobacter baumannii strain A118

39.744

100

0.405
  pilA Pseudomonas aeruginosa PAK

39.355

100

0.399
  pilA Vibrio campbellii strain DS40M4

39.735

98.693

0.392
  pilA/pilA1 Eikenella corrodens VA1

37.58

100

0.386
  pilA Vibrio parahaemolyticus RIMD 2210633

41.727

90.85

0.379
  pilA Haemophilus influenzae Rd KW20

40.58

90.196

0.366
  pilA/pilAII Pseudomonas stutzeri DSM 10701

36.842

99.346

0.366

Multiple sequence alignment