Detailed information    

insolico Bioinformatically predicted

Overview

Name   crp   Type   Regulator
Locus tag   C3K24_RS12590 Genome accession   NZ_CP026491
Coordinates   2393767..2394399 (+) Length   210 a.a.
NCBI ID   WP_000242755.1    Uniprot ID   A0A1C4FZU4
Organism   Escherichia coli strain HS13-1     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 2388767..2399399
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C3K24_RS12560 (C3K24_12550) yheS 2388936..2390849 (+) 1914 WP_000634747.1 ABC transporter ATP-binding protein -
  C3K24_RS12565 (C3K24_12555) yheT 2390849..2391871 (+) 1023 WP_000057415.1 hydrolase -
  C3K24_RS12570 (C3K24_12560) yheU 2391865..2392083 (+) 219 WP_000907086.1 YheU family protein -
  C3K24_RS12575 (C3K24_12565) prkB 2392137..2393006 (+) 870 WP_001274684.1 phosphoribulokinase -
  C3K24_RS12580 (C3K24_12570) yhfA 2393061..2393465 (-) 405 WP_001148908.1 OsmC family protein -
  C3K24_RS12590 (C3K24_12580) crp 2393767..2394399 (+) 633 WP_000242755.1 cAMP-activated global transcriptional regulator CRP Regulator
  C3K24_RS12595 (C3K24_12585) yhfK 2394450..2396540 (+) 2091 WP_001304921.1 YccS/YhfK family putative transporter -
  C3K24_RS12600 (C3K24_12590) argD 2396607..2397827 (-) 1221 WP_000963803.1 bifunctional acetylornithine/succinyldiaminopimelate transaminase -
  C3K24_RS12605 (C3K24_12595) pabA 2397913..2398476 (-) 564 WP_000601853.1 aminodeoxychorismate synthase component 2 -
  C3K24_RS12610 (C3K24_12600) fic 2398508..2399110 (-) 603 WP_001280656.1 putative adenosine monophosphate-protein transferase Fic -
  C3K24_RS12615 (C3K24_12605) yhfG 2399100..2399267 (-) 168 WP_000736858.1 YhfG family protein -

Sequence

Protein


Download         Length: 210 a.a.        Molecular weight: 23640.43 Da        Isoelectric Point: 8.2710

>NTDB_id=227336 C3K24_RS12590 WP_000242755.1 2393767..2394399(+) (crp) [Escherichia coli strain HS13-1]
MVLGKPQTDPTLEWFLSHCHIHKYPSKSTLIHQGEKAETLYYIVKGSVAVLIKDEEGKEMILSYLNQGDFIGELGLFEEG
QERSAWVRAKTACEVAEISYKKFRQLIQVNPDILMRLSAQMARRLQVTSEKVGNLAFLDVTGRIAQTLLNLAKQPDAMTH
PDGMQIKITRQEIGQIVGCSRETVGRILKMLEDQNLISAHGKTIVVYGTR

Nucleotide


Download         Length: 633 bp        

>NTDB_id=227336 C3K24_RS12590 WP_000242755.1 2393767..2394399(+) (crp) [Escherichia coli strain HS13-1]
ATGGTGCTTGGCAAACCGCAAACAGACCCGACTCTCGAATGGTTCTTGTCTCATTGCCACATTCATAAGTACCCATCCAA
GAGCACGCTTATTCACCAGGGTGAAAAAGCGGAAACGCTGTACTACATCGTTAAAGGCTCTGTGGCAGTGCTGATCAAAG
ACGAAGAGGGTAAAGAAATGATCCTCTCCTATCTGAATCAGGGTGATTTTATTGGCGAACTGGGCCTGTTTGAAGAGGGC
CAGGAACGTAGCGCATGGGTACGTGCGAAAACCGCCTGTGAAGTGGCTGAAATTTCGTACAAAAAATTTCGCCAATTGAT
TCAGGTAAACCCGGACATTCTGATGCGTCTGTCTGCACAGATGGCGCGTCGTCTGCAAGTCACTTCAGAGAAAGTGGGCA
ACCTGGCGTTCCTCGACGTGACGGGCCGCATTGCACAGACTCTGCTGAATCTGGCAAAACAACCGGATGCTATGACTCAC
CCGGACGGTATGCAAATCAAAATTACCCGTCAGGAAATCGGTCAGATTGTCGGCTGTTCTCGTGAAACCGTGGGACGCAT
TCTGAAGATGCTGGAAGATCAGAACCTGATCTCCGCACACGGTAAAACCATCGTCGTTTACGGCACTCGTTAA

Domains

Predicted by InterProScan.

Cyclic nucleotide-binding domain (cNMP_binding)

(23-109)

Crp-like helix-turn-helix domain (HTH_Crp_2)

(142-206)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1C4FZU4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  crp Vibrio cholerae strain A1552

95.714

100

0.957
  crp Haemophilus influenzae Rd KW20

77.941

97.143

0.757
  crp Acinetobacter baumannii D1279779

47.343

98.571

0.467

Multiple sequence alignment