Detailed information    

insolico Bioinformatically predicted

Overview


Name   comA/nlmT   Type   Regulator
Locus tag   SMU_RS08605 Genome accession   NC_004350
Coordinates   1773449..1775740 (-) Length   763 a.a.
NCBI ID   WP_002263352.1    Uniprot ID   -
Organism   Streptococcus mutans UA159     
Function   transport of ComC (predicted from homology)   
Competence regulation

Related MGE


Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
ICE 1741267..1820659 1773449..1775740 within 0


Gene organization within MGE regions


Location: 1741267..1820659
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SMU_RS08440 (SMU.1843) - 1741398..1742837 (+) 1440 WP_002262658.1 sucrose-6-phosphate hydrolase -
  SMU_RS08445 (SMU.1844) - 1742840..1743802 (+) 963 WP_002262659.1 LacI family DNA-binding transcriptional regulator -
  SMU_RS08450 (SMU.1845) nusB 1743996..1744424 (-) 429 WP_002262660.1 transcription antitermination factor NusB -
  SMU_RS08455 (SMU.1846c) - 1744417..1744806 (-) 390 WP_002262661.1 Asp23/Gls24 family envelope stress response protein -
  SMU_RS08460 (SMU.1847) efp 1744849..1745409 (-) 561 WP_002262662.1 elongation factor P -
  SMU_RS08465 (SMU.1848) - 1745549..1746253 (+) 705 WP_002262663.1 ion transporter -
  SMU_RS08470 (SMU.1849) - 1746301..1746753 (-) 453 WP_002262664.1 deoxycytidylate deaminase -
  SMU_RS08475 (SMU.1850) - 1746923..1747987 (-) 1065 WP_002262665.1 M24 family metallopeptidase -
  SMU_RS08480 (SMU.1851) uvrA 1747977..1750808 (-) 2832 WP_002262666.1 excinuclease ABC subunit UvrA -
  SMU_RS08485 - 1750858..1751079 (+) 222 WP_019313410.1 hypothetical protein -
  SMU_RS08490 (SMU.1852) - 1751479..1752423 (+) 945 WP_002262667.1 magnesium transporter CorA family protein -
  SMU_RS08495 (SMU.1853) - 1752705..1753367 (+) 663 WP_002262668.1 DUF1129 domain-containing protein -
  SMU_RS08500 (SMU.1854) hdrR 1753506..1753862 (+) 357 WP_002262669.1 LytTR family transcriptional regulator HdrR Regulator
  SMU_RS08505 (SMU.1855) hdrM 1753859..1754545 (+) 687 WP_002262670.1 hdrR negative regulator HdrM Regulator
  SMU_RS08510 (SMU.1856c) - 1754553..1755272 (-) 720 WP_002262671.1 TraX family protein -
  SMU_RS08515 (SMU.1858) rpsR 1755591..1755830 (-) 240 WP_000068664.1 30S ribosomal protein S18 -
  SMU_RS08520 (SMU.1859) ssbA 1755859..1756353 (-) 495 WP_002261867.1 single-stranded DNA-binding protein Machinery gene
  SMU_RS08525 (SMU.1860) rpsF 1756371..1756661 (-) 291 WP_002261866.1 30S ribosomal protein S6 -
  SMU_RS08530 (SMU.1861c) - 1756817..1757062 (-) 246 WP_002263367.1 hypothetical protein -
  SMU_RS08535 (SMU.1862) - 1757367..1757570 (+) 204 WP_002263366.1 hypothetical protein -
  SMU_RS08540 (SMU.1865) mutY 1758607..1759752 (+) 1146 WP_002263365.1 A/G-specific adenine glycosylase -
  SMU_RS08545 (SMU.1867c) - 1759940..1760989 (-) 1050 WP_002263364.1 zinc-dependent alcohol dehydrogenase family protein -
  SMU_RS08550 (SMU.1869) trxA 1761087..1761401 (-) 315 WP_002263363.1 thioredoxin -
  SMU_RS08555 (SMU.1870) - 1761476..1763806 (-) 2331 WP_002263362.1 endonuclease MutS2 -
  SMU_RS08560 (SMU.1871c) - 1763875..1764420 (-) 546 WP_002263361.1 CvpA family protein -
  SMU_RS08565 (SMU.1872c) - 1764417..1764722 (-) 306 WP_002263360.1 hypothetical protein -
  SMU_RS08570 (SMU.1873) rnhC 1764918..1765829 (+) 912 WP_002271343.1 ribonuclease HIII -
  SMU_RS08575 (SMU.1874) lepB 1765849..1766436 (+) 588 WP_002263358.1 signal peptidase I -
  SMU_RS08580 (SMU.1875) - 1766522..1768885 (+) 2364 WP_002263357.1 SF1B family DNA helicase RecD2 -
  SMU_RS08585 (SMU.1876) - 1768984..1769454 (+) 471 WP_002263356.1 hypothetical protein -
  SMU_RS08590 (SMU.1877) - 1770331..1771323 (+) 993 WP_002263355.1 PTS sugar transporter subunit IIB -
  SMU_RS08595 (SMU.1878) - 1771358..1772176 (+) 819 WP_002263354.1 PTS mannose/fructose/sorbose transporter subunit IIC -
  SMU_RS08600 (SMU.1879) - 1772191..1773117 (+) 927 WP_002263353.1 PTS system mannose/fructose/sorbose family transporter subunit IID -
  SMU_RS08605 (SMU.1881c) comA/nlmT 1773449..1775740 (-) 2292 WP_002263352.1 peptide cleavage/export ABC transporter Regulator
  SMU_RS08610 (SMU.1882c) - 1776290..1776643 (-) 354 WP_002263351.1 hypothetical protein -
  SMU_RS08615 (SMU.1883) - 1776962..1777330 (+) 369 WP_002263350.1 DUF956 family protein -
  SMU_RS08620 (SMU.1884c) - 1777567..1778640 (-) 1074 WP_002263349.1 acyltransferase -
  SMU_RS08625 (SMU.1886) serS 1779164..1780444 (+) 1281 WP_002263348.1 serine--tRNA ligase -
  SMU_RS08630 (SMU.1889c) - 1781127..1781390 (-) 264 WP_002352361.1 Blp family class II bacteriocin -
  SMU_RS08635 (SMU.1892c) - 1781694..1781879 (-) 186 WP_002263346.1 ComC/BlpC family leader-containing pheromone/bacteriocin -
  SMU_RS08645 (SMU.1895c) - 1783456..1783617 (-) 162 WP_002263734.1 Blp family class II bacteriocin -
  SMU_RS08650 (SMU.1896c) - 1783662..1783916 (-) 255 WP_002263733.1 Blp family class II bacteriocin -
  SMU_RS08655 (SMU.1898) comA 1784304..1786489 (+) 2186 Protein_1681 peptide cleavage/export ABC transporter Regulator
  SMU_RS08660 (SMU.1900) comB 1786502..1787515 (+) 1014 WP_002263739.1 HlyD family efflux transporter periplasmic adaptor subunit Regulator
  SMU_RS09965 (SMU.1902c) - 1787777..1787920 (-) 144 WP_002263740.1 hypothetical protein -
  SMU_RS08665 (SMU.1904c) - 1788212..1789234 (-) 1023 WP_002263742.1 thioredoxin family protein -
  SMU_RS08670 (SMU.1905c) - 1789720..1789908 (-) 189 WP_002263743.1 Blp family class II bacteriocin -
  SMU_RS08675 (SMU.1906c) - 1790072..1790284 (-) 213 WP_002263744.1 Blp family class II bacteriocin -
  SMU_RS09970 (SMU.1908c) - 1790689..1790853 (-) 165 WP_002265308.1 hypothetical protein -
  SMU_RS10085 - 1791293..1791505 (+) 213 Protein_1688 IS3 family transposase -
  SMU_RS08680 (SMU.1909c) - 1791628..1792032 (-) 405 WP_002263912.1 hypothetical protein -
  SMU_RS08685 (SMU.1910c) - 1792179..1792598 (-) 420 WP_002263913.1 hypothetical protein -
  SMU_RS08690 (SMU.1913c) - 1793979..1794380 (-) 402 WP_002310604.1 hypothetical protein -
  SMU_RS08695 (SMU.1914c) cipB 1794511..1794741 (-) 231 WP_002265368.1 Blp family class II bacteriocin Regulator
  SMU_RS08700 (SMU.1915) comC/blpC 1795008..1795148 (+) 141 WP_002267610.1 ComC/BlpC family leader-containing pheromone/bacteriocin Regulator
  SMU_RS08705 (SMU.1916) comD/blpH 1795290..1796615 (-) 1326 WP_002262113.1 sensor histidine kinase Regulator
  SMU_RS08710 (SMU.1917) comE/blpR 1796612..1797364 (-) 753 WP_002262114.1 response regulator transcription factor Regulator
  SMU_RS08715 (SMU.1918) - 1797836..1798474 (-) 639 WP_002262115.1 VTT domain-containing protein -
  SMU_RS08720 (SMU.1919) - 1798521..1799147 (-) 627 WP_002262116.1 hypothetical protein -
  SMU_RS08725 (SMU.1920) der 1799222..1800532 (-) 1311 WP_002262117.1 ribosome biogenesis GTPase Der -
  SMU_RS08730 (SMU.1921) dnaI 1800545..1801444 (-) 900 WP_002262118.1 primosomal protein DnaI -
  SMU_RS08735 (SMU.1922) - 1801445..1802614 (-) 1170 WP_002262119.1 DnaD domain protein -
  SMU_RS08740 (SMU.1923c) nrdR 1802601..1803092 (-) 492 WP_002262120.1 transcriptional regulator NrdR -
  SMU_RS08745 (SMU.1924) covR 1803462..1804154 (-) 693 WP_002262121.1 response regulator GcrR Regulator
  SMU_RS08750 (SMU.1925c) - 1804511..1805047 (-) 537 WP_002262122.1 DUF177 domain-containing protein -
  SMU_RS08755 (SMU.1926) - 1805040..1805615 (-) 576 WP_002262123.1 TetR/AcrR family transcriptional regulator -
  SMU_RS08760 (SMU.1927) - 1805723..1806430 (+) 708 WP_002262124.1 ABC transporter ATP-binding protein -
  SMU_RS08765 (SMU.1928) - 1806432..1809044 (+) 2613 WP_002263841.1 ABC transporter permease -
  SMU_RS08770 (SMU.1929) htpX 1809181..1810080 (-) 900 WP_002262126.1 zinc metalloprotease HtpX -
  SMU_RS08775 (SMU.1930) - 1810090..1810650 (-) 561 WP_002262127.1 LemA family protein -
  SMU_RS08780 (SMU.1931) rsmG 1810738..1811451 (+) 714 WP_002262128.1 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG -
  SMU_RS08785 (SMU.1933c) - 1811675..1812508 (-) 834 WP_002262129.1 energy-coupling factor transporter transmembrane component T family protein -
  SMU_RS08790 (SMU.1934c) - 1812501..1814177 (-) 1677 WP_002262130.1 ABC transporter ATP-binding protein -
  SMU_RS08795 (SMU.1935c) - 1814206..1814751 (-) 546 WP_002262131.1 ECF-type riboflavin transporter substrate-binding protein -
  SMU_RS08800 (SMU.1936c) - 1814761..1815606 (-) 846 WP_002262132.1 SAM hydrolase/SAM-dependent halogenase family protein -
  SMU_RS08805 (SMU.1937) - 1815730..1816506 (-) 777 WP_002262133.1 carbon-nitrogen family hydrolase -
  SMU_RS08810 (SMU.1938c) - 1816574..1817263 (-) 690 WP_002262134.1 methionine ABC transporter permease -
  SMU_RS08815 (SMU.1939c) - 1817265..1818329 (-) 1065 WP_002262135.1 methionine ABC transporter ATP-binding protein -
  SMU_RS08820 (SMU.1940c) - 1818322..1819695 (-) 1374 WP_002262136.1 M20/M25/M40 family metallo-hydrolase -

Sequence


Protein


Download         Length: 763 a.a.        Molecular weight: 86450.75 Da        Isoelectric Point: 7.1052

>NTDB_id=22431 SMU_RS08605 WP_002263352.1 1773449..1775740(-) (comA/nlmT) [Streptococcus mutans UA159]
MNIFSYLLLTVVSVLLVNLFLEFIKYFFKTTPAMNKENSKKSSIFLWSRTRRFKFVPQVDNRDCGPAALASIAKHYGSYY
SLVHLRELTKTDRQGTTALGIIEAAKNIGFETYSLDADMSLFNYDDLIYPFIVHVVKNKRLQHYYVVYDDEGDSLIIGDP
DPSVKVIRMSKERFQHEWTGVAIFFSPKDDYQPQKDKRRGLTSFIPSFLKQKSLLFYIIMASLIITLIEIIGAFYLQVML
DEYIPSQKISTLGFITLGLIITYVAQQIIAFAKEYLLIILGQRLVIDVILTYIKHIFILPMSFFSTRRTGEITSRFTDAN
QIIDAVASTIFSIFLDISMVFIVGGVLLIQNVVLFFLALLCVPIYIIIVFAFMKMFGYLNYEVMESNAIMSSSVIEDING
IETIKSLTSEEVSYQRIDKEFVDFLEKSFRLHKYGAIQVSIKTAAKLILNIVILWYGARLVMTGKISVGQMIAFNVLLGY
FSSPIENMINLQIKLQSARIANTRLNEVYLVDSEFENNGELSEGSFLDGDISFEKLSYKYGYGRDTLSDINLTIKKGSKV
SLVGASGSGKTTLAKMIVNFYEPIQGLIRLNGYDLKDIDKTVLRQHINYLPQQAYVFSGTIMDNLTLGAKEDTIQEDIIR
ACEIAEIHSDIEQMPLGYQTELSDSTGVSGGQKQRIALARALLTQAPVLILDEATSSLDVLTEKKIVNNLMAMTNKTIVF
VAHRLSIAQRTDRIIVMDQGKIVEEGSHKELLAHKGFYYKLFN

Nucleotide


Download         Length: 2292 bp        

>NTDB_id=22431 SMU_RS08605 WP_002263352.1 1773449..1775740(-) (comA/nlmT) [Streptococcus mutans UA159]
ATGAACATATTTTCTTATCTTCTTTTGACTGTAGTTTCAGTATTATTAGTCAATTTATTCTTAGAATTTATAAAATACTT
TTTTAAAACAACTCCAGCAATGAATAAGGAAAATTCTAAGAAATCTTCAATTTTTTTGTGGAGTCGAACTAGACGTTTTA
AATTTGTACCACAAGTCGATAATAGAGACTGTGGCCCGGCTGCTCTAGCCTCTATTGCCAAACATTATGGTTCATATTAT
TCCTTGGTTCATCTGCGTGAACTTACAAAGACAGATCGACAAGGCACCACAGCATTAGGCATCATTGAAGCTGCCAAAAA
TATTGGATTTGAAACTTACTCGCTAGATGCTGATATGTCTTTATTTAATTATGATGACCTTATTTACCCTTTTATTGTTC
ACGTTGTTAAAAATAAACGTCTTCAACATTACTATGTTGTTTATGACGATGAAGGAGATAGTCTAATCATCGGAGATCCA
GATCCTTCTGTCAAAGTTATTCGCATGTCTAAGGAGAGATTTCAGCATGAATGGACAGGTGTAGCTATCTTCTTTTCCCC
AAAGGATGATTATCAGCCTCAAAAAGATAAAAGAAGAGGATTAACAAGTTTCATACCTTCTTTTTTAAAGCAAAAGAGTC
TCTTGTTCTATATTATAATGGCGAGTTTAATCATTACTTTAATAGAAATTATTGGAGCTTTTTATCTCCAAGTAATGCTG
GATGAGTATATTCCCAGTCAAAAAATTTCAACTTTAGGCTTTATCACTTTAGGATTAATAATAACTTATGTTGCCCAACA
AATAATAGCTTTTGCAAAAGAGTACTTATTAATTATATTAGGACAAAGGCTGGTAATTGATGTTATACTTACTTATATTA
AGCACATTTTTATTCTTCCGATGTCTTTTTTTTCGACAAGACGAACGGGAGAAATCACATCTCGCTTCACTGATGCCAAT
CAAATTATTGATGCTGTGGCGTCAACAATTTTTTCTATTTTCTTAGACATTTCGATGGTATTTATAGTTGGTGGAGTATT
ATTAATTCAAAATGTCGTTTTATTTTTCCTAGCCTTGCTCTGCGTTCCTATCTACATTATCATTGTTTTTGCATTTATGA
AAATGTTTGGTTACTTAAACTATGAGGTAATGGAAAGTAATGCGATAATGTCTTCATCTGTTATTGAGGATATTAATGGA
ATAGAAACTATCAAATCTTTGACGAGTGAAGAAGTTAGCTATCAGAGAATTGACAAGGAATTTGTTGATTTTTTAGAGAA
ATCTTTTAGGCTGCATAAGTATGGAGCTATTCAAGTCTCAATTAAAACTGCTGCAAAGCTAATTTTGAATATCGTTATTC
TATGGTATGGAGCACGATTGGTTATGACCGGGAAAATTTCAGTGGGTCAAATGATTGCTTTTAATGTGCTTTTAGGATAT
TTTTCAAGCCCAATTGAAAATATGATTAATTTACAAATTAAGCTCCAATCAGCCCGCATAGCTAATACGCGTCTCAATGA
AGTCTATCTGGTCGATTCTGAGTTTGAAAATAATGGGGAGCTTTCAGAAGGCAGCTTTTTGGATGGGGATATCTCTTTTG
AAAAGTTATCTTACAAGTATGGTTATGGTCGTGATACTCTGTCAGATATCAATCTAACTATTAAAAAAGGTTCAAAGGTC
AGTCTGGTCGGAGCCTCTGGTTCTGGTAAAACGACTCTTGCCAAGATGATTGTCAATTTTTATGAACCTATACAGGGTCT
TATCCGTCTTAATGGCTATGACCTAAAAGATATAGATAAGACTGTTTTACGCCAGCATATTAACTATCTCCCCCAACAAG
CTTATGTCTTTAGTGGTACCATTATGGATAATCTGACCTTGGGAGCCAAGGAAGACACTATTCAGGAAGATATTATTCGA
GCCTGTGAAATTGCTGAGATTCATTCAGACATTGAACAAATGCCGCTGGGGTACCAGACTGAGTTATCTGATAGTACTGG
AGTTTCCGGTGGCCAGAAGCAGCGGATTGCCTTGGCTCGCGCTCTCTTAACCCAAGCTCCAGTTTTGATTTTGGATGAAG
CCACCAGCAGTCTGGATGTCCTGACTGAAAAGAAAATCGTCAACAACCTCATGGCCATGACCAATAAGACTATTGTTTTT
GTGGCACACCGTTTGAGTATTGCTCAACGGACAGACCGAATTATTGTTATGGATCAAGGTAAGATTGTGGAAGAAGGTAG
CCATAAGGAACTTTTAGCTCATAAAGGCTTCTACTACAAGCTGTTTAACTAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA/nlmT Streptococcus mutans UA159

73.81

99.083

0.731

  comA Streptococcus mitis NCTC 12261

62.676

93.054

0.583

  comA Streptococcus pneumoniae Rx1

61.831

93.054

0.575

  comA Streptococcus pneumoniae D39

61.831

93.054

0.575

  comA Streptococcus pneumoniae R6

61.831

93.054

0.575

  comA Streptococcus mitis SK321

61.831

93.054

0.575

  comA Streptococcus pneumoniae TIGR4

61.549

93.054

0.573

  comA Streptococcus gordonii str. Challis substr. CH1

60.224

93.578

0.564


Multiple sequence alignment