Detailed information
Bioinformatically predicted
Overview
| Name | pilT | Type | Machinery gene |
| Locus tag | B6A39_RS01840 | Genome accession | NZ_CP020562 |
| Coordinates | 383657..384700 (+) | Length | 347 a.a. |
| NCBI ID | WP_083000769.1 | Uniprot ID | - |
| Organism | Halomonas sp. GT | ||
| Function | type IV pilus retraction (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 378657..389700
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| B6A39_RS01810 | - | 379016..379477 (-) | 462 | WP_083000757.1 | DUF4426 domain-containing protein | - |
| B6A39_RS01815 | metW | 379526..380119 (-) | 594 | WP_083000759.1 | methionine biosynthesis protein MetW | - |
| B6A39_RS01820 | - | 380119..381315 (-) | 1197 | WP_083000761.1 | homoserine O-acetyltransferase | - |
| B6A39_RS01825 | - | 381380..381973 (-) | 594 | WP_009723714.1 | YggT family protein | - |
| B6A39_RS01830 | proC | 382003..382827 (-) | 825 | WP_083000764.1 | pyrroline-5-carboxylate reductase | - |
| B6A39_RS01835 | - | 382906..383622 (-) | 717 | WP_083000766.1 | YggS family pyridoxal phosphate-dependent enzyme | - |
| B6A39_RS01840 | pilT | 383657..384700 (+) | 1044 | WP_083000769.1 | type IV pilus twitching motility protein PilT | Machinery gene |
| B6A39_RS01845 | - | 384733..385875 (-) | 1143 | WP_083000771.1 | anhydro-N-acetylmuramic acid kinase | - |
| B6A39_RS01850 | tyrS | 385993..387192 (+) | 1200 | WP_083000774.1 | tyrosine--tRNA ligase | - |
Sequence
Protein
Download Length: 347 a.a. Molecular weight: 38032.44 Da Isoelectric Point: 6.1827
>NTDB_id=224143 B6A39_RS01840 WP_083000769.1 383657..384700(+) (pilT) [Halomonas sp. GT]
MDITELLAFSAKQNASDLHLSAGLPPMIRVDGDIRRLNVPAMDNSEVRRLIFDIMNEQQRRDYEAHLEADFSFEVSGVAR
FRVNAFHQARGAGAVFRTIPNDVLSMSTLGMGDVFERLAMLPRGLVLVTGPTGSGKSTTLAAMIDYINDHRFEHILTIED
PVEFVHTSKRCLINQREVHRDTRSFTAALRSALREDPDVILVGELRDLETIRLALTAAETGHLVFGTLHTTSAAKTIDRI
IDVFPGEEKSMVRSMLSESLQAVVSQTLLKRQGGGRVAAHEVLIATAAVRNLIREDKVAQIYSAIQTGGNLGMQTLNASL
AKLVKEGVVSMEDAQAQAKGTLSLSDD
MDITELLAFSAKQNASDLHLSAGLPPMIRVDGDIRRLNVPAMDNSEVRRLIFDIMNEQQRRDYEAHLEADFSFEVSGVAR
FRVNAFHQARGAGAVFRTIPNDVLSMSTLGMGDVFERLAMLPRGLVLVTGPTGSGKSTTLAAMIDYINDHRFEHILTIED
PVEFVHTSKRCLINQREVHRDTRSFTAALRSALREDPDVILVGELRDLETIRLALTAAETGHLVFGTLHTTSAAKTIDRI
IDVFPGEEKSMVRSMLSESLQAVVSQTLLKRQGGGRVAAHEVLIATAAVRNLIREDKVAQIYSAIQTGGNLGMQTLNASL
AKLVKEGVVSMEDAQAQAKGTLSLSDD
Nucleotide
Download Length: 1044 bp
>NTDB_id=224143 B6A39_RS01840 WP_083000769.1 383657..384700(+) (pilT) [Halomonas sp. GT]
ATGGATATTACCGAACTGCTGGCATTCTCGGCAAAGCAGAATGCATCTGATCTGCACCTTTCTGCCGGGCTTCCACCTAT
GATACGTGTTGATGGCGATATTCGTCGGCTTAATGTACCGGCAATGGACAATAGTGAAGTTCGTCGCCTGATTTTTGACA
TTATGAATGAGCAGCAGCGTCGAGACTATGAGGCGCACTTAGAAGCTGATTTTTCATTCGAAGTATCTGGGGTGGCTCGT
TTTCGTGTTAATGCATTCCATCAAGCGCGGGGGGCTGGCGCGGTGTTTCGTACGATTCCTAACGACGTGCTTTCAATGAG
CACCTTGGGGATGGGCGACGTATTCGAGCGATTAGCAATGCTGCCAAGGGGGTTGGTGTTGGTGACCGGGCCAACCGGTT
CGGGCAAAAGCACCACGTTGGCTGCAATGATCGATTACATTAATGATCATCGTTTTGAACATATTTTAACGATCGAAGAC
CCTGTTGAGTTTGTACATACCAGTAAGCGCTGTTTAATAAATCAGCGTGAAGTGCATCGAGATACGCGCAGTTTTACTGC
CGCATTGCGCAGCGCATTACGTGAAGACCCTGATGTCATTTTGGTCGGCGAACTTCGAGATCTAGAAACCATTCGGCTGG
CGCTCACGGCTGCTGAAACTGGCCACCTAGTGTTTGGCACGCTGCATACAACGTCCGCAGCGAAAACGATTGATCGTATT
ATCGATGTGTTTCCTGGGGAAGAGAAATCGATGGTTCGCTCAATGCTATCAGAGTCGCTGCAAGCAGTGGTCTCTCAAAC
ATTATTGAAGCGCCAGGGGGGTGGGCGTGTTGCTGCTCATGAAGTATTGATTGCCACTGCCGCGGTCCGGAATTTAATAC
GTGAAGATAAGGTAGCTCAAATTTATTCAGCCATTCAGACCGGAGGCAATCTTGGCATGCAAACGTTAAATGCCTCGCTT
GCGAAGCTTGTTAAAGAGGGCGTAGTGAGTATGGAAGATGCACAGGCACAAGCCAAAGGCACACTCTCGTTAAGCGATGA
CTAA
ATGGATATTACCGAACTGCTGGCATTCTCGGCAAAGCAGAATGCATCTGATCTGCACCTTTCTGCCGGGCTTCCACCTAT
GATACGTGTTGATGGCGATATTCGTCGGCTTAATGTACCGGCAATGGACAATAGTGAAGTTCGTCGCCTGATTTTTGACA
TTATGAATGAGCAGCAGCGTCGAGACTATGAGGCGCACTTAGAAGCTGATTTTTCATTCGAAGTATCTGGGGTGGCTCGT
TTTCGTGTTAATGCATTCCATCAAGCGCGGGGGGCTGGCGCGGTGTTTCGTACGATTCCTAACGACGTGCTTTCAATGAG
CACCTTGGGGATGGGCGACGTATTCGAGCGATTAGCAATGCTGCCAAGGGGGTTGGTGTTGGTGACCGGGCCAACCGGTT
CGGGCAAAAGCACCACGTTGGCTGCAATGATCGATTACATTAATGATCATCGTTTTGAACATATTTTAACGATCGAAGAC
CCTGTTGAGTTTGTACATACCAGTAAGCGCTGTTTAATAAATCAGCGTGAAGTGCATCGAGATACGCGCAGTTTTACTGC
CGCATTGCGCAGCGCATTACGTGAAGACCCTGATGTCATTTTGGTCGGCGAACTTCGAGATCTAGAAACCATTCGGCTGG
CGCTCACGGCTGCTGAAACTGGCCACCTAGTGTTTGGCACGCTGCATACAACGTCCGCAGCGAAAACGATTGATCGTATT
ATCGATGTGTTTCCTGGGGAAGAGAAATCGATGGTTCGCTCAATGCTATCAGAGTCGCTGCAAGCAGTGGTCTCTCAAAC
ATTATTGAAGCGCCAGGGGGGTGGGCGTGTTGCTGCTCATGAAGTATTGATTGCCACTGCCGCGGTCCGGAATTTAATAC
GTGAAGATAAGGTAGCTCAAATTTATTCAGCCATTCAGACCGGAGGCAATCTTGGCATGCAAACGTTAAATGCCTCGCTT
GCGAAGCTTGTTAAAGAGGGCGTAGTGAGTATGGAAGATGCACAGGCACAAGCCAAAGGCACACTCTCGTTAAGCGATGA
CTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilT | Pseudomonas stutzeri DSM 10701 |
76.401 |
97.695 |
0.746 |
| pilT | Pseudomonas aeruginosa PAK |
76.106 |
97.695 |
0.744 |
| pilT | Acinetobacter nosocomialis M2 |
74.631 |
97.695 |
0.729 |
| pilT | Acinetobacter baumannii D1279779 |
74.631 |
97.695 |
0.729 |
| pilT | Acinetobacter baumannii strain A118 |
74.631 |
97.695 |
0.729 |
| pilT | Acinetobacter baylyi ADP1 |
73.256 |
99.135 |
0.726 |
| pilT | Legionella pneumophila strain Lp02 |
69.527 |
97.406 |
0.677 |
| pilT | Legionella pneumophila strain ERS1305867 |
69.527 |
97.406 |
0.677 |
| pilT | Vibrio cholerae O1 biovar El Tor strain E7946 |
69.139 |
97.118 |
0.671 |
| pilT | Vibrio cholerae strain A1552 |
69.139 |
97.118 |
0.671 |
| pilT | Neisseria meningitidis 8013 |
65.318 |
99.712 |
0.651 |
| pilT | Neisseria gonorrhoeae MS11 |
65.029 |
99.712 |
0.648 |
| pilT | Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539 |
53.153 |
95.965 |
0.51 |
| pilU | Pseudomonas stutzeri DSM 10701 |
42.478 |
97.695 |
0.415 |
| pilU | Acinetobacter baylyi ADP1 |
40.588 |
97.983 |
0.398 |
| pilU | Vibrio cholerae strain A1552 |
40.299 |
96.542 |
0.389 |