Detailed information
Bioinformatically predicted
Overview
| Name | pilT | Type | Machinery gene |
| Locus tag | ECs_3826 | Genome accession | NC_002695 |
| Coordinates | 3835733..3836713 (-) | Length | 326 a.a. |
| NCBI ID | NP_311854.2 | Uniprot ID | - |
| Organism | Escherichia coli O157:H7 str. Sakai | ||
| Function | type IV pilus retraction (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 3830733..3841713
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ECs_3820 | yggI | 3831423..3831878 (+) | 456 | NP_311847.2 | hypothetical protein | - |
| ECs_3821 | endA | 3831973..3832680 (+) | 708 | NP_311848.1 | DNA-specific endonuclease I | - |
| ECs_3822 | rsmE | 3832760..3833491 (+) | 732 | NP_311849.2 | 16S rRNA m(3)U1498 methyltransferase | - |
| ECs_3823 | gshB | 3833504..3834451 (+) | 948 | NP_311850.1 | glutathione synthetase | - |
| ECs_3824 | yqgE | 3834491..3835126 (+) | 636 | NP_311851.3 | hypothetical protein | - |
| ECs_3825 | yqgF | 3835126..3835542 (+) | 417 | NP_311852.1 | holliday junction resolvase | - |
| ECs_3826 | pilT | 3835733..3836713 (-) | 981 | NP_311854.2 | twitching motility protein PilT | Machinery gene |
| ECs_3827 | yggS | 3836731..3837435 (+) | 705 | NP_311853.3 | hypothetical protein | - |
| ECs_3828 | yggT | 3837453..3838019 (+) | 567 | NP_311855.1 | hypothetical protein | - |
| ECs_3829 | yggU | 3838016..3838306 (+) | 291 | NP_311856.2 | hypothetical protein | - |
| ECs_3830 | rdgB | 3838314..3838907 (+) | 594 | NP_311857.1 | dITP/XTP pyrophosphatase | - |
| ECs_3831 | yggW | 3838900..3840036 (+) | 1137 | NP_311858.1 | oxidoreductase | - |
| ECs_3832 | yggM | 3840279..3841286 (-) | 1008 | NP_311859.1 | hypothetical protein | - |
Sequence
Protein
Download Length: 326 a.a. Molecular weight: 35982.18 Da Isoelectric Point: 5.7654
>NTDB_id=20833 ECs_3826 NP_311854.2 3835733..3836713(-) (pilT) [Escherichia coli O157:H7 str. Sakai]
MNMEEIVALSVKHNVSDLHLCSAWPARWRIRGLMEAAPFDAPDVEELLREWLDDDQRAILLENGQLDFAVSLTENQRLRG
SAFAQRHGISLALRLLPSHCPQLEQLGTPPILPELLKSENGLILVTGATGSGKSTTLAAMVGYLNQHADAHILTLEDPVE
YLYASQRCLIQQREIGLHCMTFASGLRAALREDPDVILLGELRDSETIRLALTAAETGHLVLATLHTRGAAQAVERLVDS
FPAQEKDPVRNQLAGSLRAVLSQKLEVDKQEGRVALFELLINTPAVGNLIREGKTHQLPHVIQTGQQVGMITFQQSYQQR
VGEGRL
MNMEEIVALSVKHNVSDLHLCSAWPARWRIRGLMEAAPFDAPDVEELLREWLDDDQRAILLENGQLDFAVSLTENQRLRG
SAFAQRHGISLALRLLPSHCPQLEQLGTPPILPELLKSENGLILVTGATGSGKSTTLAAMVGYLNQHADAHILTLEDPVE
YLYASQRCLIQQREIGLHCMTFASGLRAALREDPDVILLGELRDSETIRLALTAAETGHLVLATLHTRGAAQAVERLVDS
FPAQEKDPVRNQLAGSLRAVLSQKLEVDKQEGRVALFELLINTPAVGNLIREGKTHQLPHVIQTGQQVGMITFQQSYQQR
VGEGRL
Nucleotide
Download Length: 981 bp
>NTDB_id=20833 ECs_3826 NP_311854.2 3835733..3836713(-) (pilT) [Escherichia coli O157:H7 str. Sakai]
ATGAATATGGAAGAAATTGTGGCCCTTAGTGTAAAGCATAACGTCTCGGATCTACACCTGTGCAGCGCCTGGCCCGCACG
ATGGCGCATTCGCGGGCTAATGGAAGCTGCGCCGTTTGATGCGCCGGACGTCGAAGAGCTACTGCGGGAGTGGCTGGATG
ACGATCAGCGGGCAATATTGCTGGAGAATGGTCAGCTGGATTTTGCCGTGTCGCTGACGGAAAACCAGCGATTGCGTGGC
AGCGCATTCGCGCAACGGCATGGCATTTCGCTGGCGTTACGGCTGTTACCTTCGCACTGCCCGCAGCTCGAACAGCTTGG
CACACCACCGATATTGCCGGAGTTACTCAAGAGCGAGAATGGCTTGATTCTGGTGACGGGGGCGACGGGGAGTGGCAAAT
CTACCACGCTGGCGGCGATGGTTGGTTATCTCAATCAACATGCTGATGCGCATATTCTGACGCTGGAAGATCCTGTGGAA
TATCTCTATGCCAGCCAGCGATGTTTGATCCAGCAGCGGGAAATCGGTTTGCATTGTATGACGTTCGCATCGGGATTGCG
GGCCGCATTGCGGGAAGATCCTGATGTGATTTTGCTCGGAGAGCTGCGTGACAGCGAGACAATCCGTCTGGCGCTGACGG
CGGCAGAAACCGGGCATCTGGTGCTGGCAACCTTACATACACGTGGTGCCGCGCAGGCAGTTGAGCGACTTGTGGATTCA
TTTCCGGCGCAGGAAAAAGACCCCGTGCGTAATCAACTGGCAGGTAGTTTACGGGCAGTGCTGTCACAAAAGCTGGAAGT
GGATAAACAGGAAGGACGCGTGGCGCTATTTGAATTGCTGATTAACACACCCGCGGTGGGGAATTTGATTCGCGAAGGGA
AAACCCACCAGTTACCGCATGTTATTCAAACTGGGCAACAGGTGGGGATGATAACGTTTCAGCAGAGTTATCAGCAGCGG
GTGGGGGAAGGGCGTTTGTGA
ATGAATATGGAAGAAATTGTGGCCCTTAGTGTAAAGCATAACGTCTCGGATCTACACCTGTGCAGCGCCTGGCCCGCACG
ATGGCGCATTCGCGGGCTAATGGAAGCTGCGCCGTTTGATGCGCCGGACGTCGAAGAGCTACTGCGGGAGTGGCTGGATG
ACGATCAGCGGGCAATATTGCTGGAGAATGGTCAGCTGGATTTTGCCGTGTCGCTGACGGAAAACCAGCGATTGCGTGGC
AGCGCATTCGCGCAACGGCATGGCATTTCGCTGGCGTTACGGCTGTTACCTTCGCACTGCCCGCAGCTCGAACAGCTTGG
CACACCACCGATATTGCCGGAGTTACTCAAGAGCGAGAATGGCTTGATTCTGGTGACGGGGGCGACGGGGAGTGGCAAAT
CTACCACGCTGGCGGCGATGGTTGGTTATCTCAATCAACATGCTGATGCGCATATTCTGACGCTGGAAGATCCTGTGGAA
TATCTCTATGCCAGCCAGCGATGTTTGATCCAGCAGCGGGAAATCGGTTTGCATTGTATGACGTTCGCATCGGGATTGCG
GGCCGCATTGCGGGAAGATCCTGATGTGATTTTGCTCGGAGAGCTGCGTGACAGCGAGACAATCCGTCTGGCGCTGACGG
CGGCAGAAACCGGGCATCTGGTGCTGGCAACCTTACATACACGTGGTGCCGCGCAGGCAGTTGAGCGACTTGTGGATTCA
TTTCCGGCGCAGGAAAAAGACCCCGTGCGTAATCAACTGGCAGGTAGTTTACGGGCAGTGCTGTCACAAAAGCTGGAAGT
GGATAAACAGGAAGGACGCGTGGCGCTATTTGAATTGCTGATTAACACACCCGCGGTGGGGAATTTGATTCGCGAAGGGA
AAACCCACCAGTTACCGCATGTTATTCAAACTGGGCAACAGGTGGGGATGATAACGTTTCAGCAGAGTTATCAGCAGCGG
GTGGGGGAAGGGCGTTTGTGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilT | Vibrio cholerae O1 biovar El Tor strain E7946 |
49.541 |
100 |
0.497 |
| pilT | Vibrio cholerae strain A1552 |
49.541 |
100 |
0.497 |
| pilT | Neisseria meningitidis 8013 |
48.78 |
100 |
0.491 |
| pilT | Neisseria gonorrhoeae MS11 |
48.476 |
100 |
0.488 |
| pilT | Acinetobacter baumannii strain A118 |
46.789 |
100 |
0.469 |
| pilT | Acinetobacter baylyi ADP1 |
46.789 |
100 |
0.469 |
| pilT | Acinetobacter baumannii D1279779 |
46.789 |
100 |
0.469 |
| pilT | Acinetobacter nosocomialis M2 |
46.789 |
100 |
0.469 |
| pilT | Pseudomonas stutzeri DSM 10701 |
46.177 |
100 |
0.463 |
| pilT | Pseudomonas aeruginosa PAK |
45.566 |
100 |
0.457 |
| pilT | Legionella pneumophila strain Lp02 |
45.26 |
100 |
0.454 |
| pilT | Legionella pneumophila strain ERS1305867 |
45.26 |
100 |
0.454 |
| pilT | Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539 |
42.138 |
97.546 |
0.411 |
| pilU | Vibrio cholerae strain A1552 |
40.379 |
97.239 |
0.393 |
| pilU | Pseudomonas stutzeri DSM 10701 |
37.273 |
100 |
0.377 |
| pilU | Acinetobacter baylyi ADP1 |
37.654 |
99.387 |
0.374 |