Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   SSU05_0988 Genome accession   CP000407
Coordinates   965967..966443 (-) Length   158 a.a.
NCBI ID   ABP89954.1    Uniprot ID   -
Organism   Streptococcus suis 05ZYH33     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 960967..971443
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SSU05_0982 - 961446..961631 (-) 186 ABP89948.1 hypothetical protein -
  SSU05_0983 - 961818..962183 (-) 366 ABP89949.1 Ribosomal protein L7/L12 -
  SSU05_0984 - 962249..962779 (-) 531 ABP89950.1 Ribosomal protein L10 -
  SSU05_0985 - 963320..965461 (-) 2142 ABP89951.1 DNA topoisomerase I -
  SSU05_0986 dprA/cilB/dalA 965515..965652 (-) 138 ABP89952.1 Predicted Rossmann fold nucleotide-binding protein involved in DNA uptake Machinery gene
  SSU05_0987 dprA 965671..965970 (-) 300 ABP89953.1 Predicted Rossmann fold nucleotide-binding protein involved in DNA uptake Machinery gene
  SSU05_0988 dprA 965967..966443 (-) 477 ABP89954.1 Predicted Rossmann fold nucleotide-binding protein involved in DNA uptake Machinery gene
  SSU05_0989 - 966415..966972 (-) 558 ABP89955.1 Acetyltransferase (isoleucine patch superfamily) -
  SSU05_0990 - 966983..967243 (-) 261 ABP89956.1 Uncharacterized protein conserved in bacteria -
  SSU05_0991 - 967308..967673 (+) 366 ABP89957.1 Rhodanese-related sulfurtransferase -
  SSU05_0992 - 967670..969328 (+) 1659 ABP89958.1 Uncharacterized NAD(FAD)-dependent dehydrogenase -
  SSU05_0993 - 969436..969987 (+) 552 ABP89959.1 hypothetical protein -
  SSU05_0994 - 969977..970627 (+) 651 ABP89960.1 Predicted membrane protein -

Sequence

Protein


Download         Length: 158 a.a.        Molecular weight: 18518.86 Da        Isoelectric Point: 9.9676

>NTDB_id=20163 SSU05_0988 ABP89954.1 965967..966443(-) (dprA) [Streptococcus suis 05ZYH33]
MLSKKYLKNNSSSGEFFLCLANRLDEVKKMNNFELFKWKKAGLTYLNVNKVLAYQEKHGKKLTLRNVAVVSECKNPVLFM
ENYKNLDTKACREEFNKYPSFSILDDIYPLALKQIYNPPVLLFYQGDLELLEKLKLALLVHEMPVKMVSNLFRKLSRN

Nucleotide


Download         Length: 477 bp        

>NTDB_id=20163 SSU05_0988 ABP89954.1 965967..966443(-) (dprA) [Streptococcus suis 05ZYH33]
GTGTTATCAAAGAAATACCTAAAAAATAATTCTTCTTCGGGAGAATTTTTTCTTTGCCTTGCGAATAGACTAGATGAGGT
GAAGAAAATGAATAATTTTGAATTGTTTAAATGGAAAAAAGCAGGTTTGACCTATCTTAATGTGAATAAAGTTTTGGCCT
ATCAAGAAAAACACGGTAAAAAATTGACCTTGCGAAATGTCGCTGTAGTGTCTGAATGTAAAAATCCAGTGCTATTTATG
GAAAATTATAAGAATCTAGATACAAAAGCCTGTCGCGAGGAATTTAATAAGTATCCATCATTTTCAATTTTAGATGACAT
CTATCCTTTGGCGCTCAAACAGATTTACAATCCACCTGTACTTTTGTTTTATCAAGGGGATTTAGAATTGCTAGAAAAAT
TAAAGCTGGCGTTGTTGGTACACGAAATGCCAGTAAAAATGGTATCCAATCTGTTCAGAAAATTATCAAGGAATTGA

Domains

Predicted by InterProScan.

DNA processing protein A sterile alpha motif domain (SAM_DprA)

(30-90)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Streptococcus mutans UA159

56.818

83.544

0.475
  dprA Lactococcus lactis subsp. cremoris KW2

45.113

84.177

0.38

Multiple sequence alignment