Detailed information
Bioinformatically predicted
Overview
| Name | pilT | Type | Machinery gene |
| Locus tag | BC375_RS06730 | Genome accession | NZ_CP016610 |
| Coordinates | 1350386..1351420 (+) | Length | 344 a.a. |
| NCBI ID | WP_046419718.1 | Uniprot ID | - |
| Organism | Xylella fastidiosa strain Salento-2 | ||
| Function | type IV pilus retraction (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1345386..1356420
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| BC375_RS06705 (BC375_06255) | - | 1346033..1346812 (+) | 780 | WP_023906627.1 | beta-ketoacyl synthase chain length factor | - |
| BC375_RS06710 (BC375_06260) | - | 1346809..1347633 (+) | 825 | WP_010894133.1 | glycosyltransferase family 2 protein | - |
| BC375_RS06720 (BC375_06265) | - | 1348297..1349181 (-) | 885 | WP_046419722.1 | glycosyltransferase family 2 protein | - |
| BC375_RS06725 (BC375_06270) | - | 1349537..1349749 (-) | 213 | WP_046419721.1 | hypothetical protein | - |
| BC375_RS06730 (BC375_06275) | pilT | 1350386..1351420 (+) | 1035 | WP_046419718.1 | type IV pilus twitching motility protein PilT | Machinery gene |
| BC375_RS06735 (BC375_06280) | pilU | 1351586..1352716 (+) | 1131 | WP_010894128.1 | PilT/PilU family type 4a pilus ATPase | Machinery gene |
| BC375_RS06740 (BC375_06285) | - | 1353233..1354246 (-) | 1014 | WP_046419716.1 | YafY family protein | - |
| BC375_RS06750 (BC375_06290) | - | 1355090..1355899 (+) | 810 | WP_046419714.1 | DUF481 domain-containing protein | - |
Sequence
Protein
Download Length: 344 a.a. Molecular weight: 38527.22 Da Isoelectric Point: 6.8843
>NTDB_id=189667 BC375_RS06730 WP_046419718.1 1350386..1351420(+) (pilT) [Xylella fastidiosa strain Salento-2]
MDIAELLAFSVKNNASDLHLSAGLPPMIRVDGDVRRINIPAFDHKQVQSLIYDIMSDKQRRDYEEALETDFSFEIPSLSR
FRVNAFNQERGAGAVFRTIPNKVMTLDELGCLPVFRKLIEEPQGLILVTGPTGSGKSTTLAAMIDHINKNTHGHILTIED
PIEFVHTSQKCLINQREVHRDTHDFNKALSSALREDPDIILIGELRDLETIRLALTAAETGHLVFGTLHTNSAAKSINRI
IDVFPAAEKPMVRSMLSESLCGIISQMLLKKVGGGRTAAWEIMVGTPAIRNLIREDKVAQMYSSIQTGQQYGMQTLDQHL
QDLIKRNLITRQQAREYAKDKANF
MDIAELLAFSVKNNASDLHLSAGLPPMIRVDGDVRRINIPAFDHKQVQSLIYDIMSDKQRRDYEEALETDFSFEIPSLSR
FRVNAFNQERGAGAVFRTIPNKVMTLDELGCLPVFRKLIEEPQGLILVTGPTGSGKSTTLAAMIDHINKNTHGHILTIED
PIEFVHTSQKCLINQREVHRDTHDFNKALSSALREDPDIILIGELRDLETIRLALTAAETGHLVFGTLHTNSAAKSINRI
IDVFPAAEKPMVRSMLSESLCGIISQMLLKKVGGGRTAAWEIMVGTPAIRNLIREDKVAQMYSSIQTGQQYGMQTLDQHL
QDLIKRNLITRQQAREYAKDKANF
Nucleotide
Download Length: 1035 bp
>NTDB_id=189667 BC375_RS06730 WP_046419718.1 1350386..1351420(+) (pilT) [Xylella fastidiosa strain Salento-2]
ATGGATATTGCTGAACTGTTAGCGTTTTCAGTCAAAAACAATGCTTCGGACCTGCACCTATCAGCAGGCCTGCCACCAAT
GATCAGGGTGGACGGCGATGTACGCCGTATCAATATCCCTGCATTCGACCATAAGCAGGTGCAATCGCTGATTTACGACA
TCATGTCGGACAAGCAACGACGCGACTACGAGGAAGCACTTGAGACGGATTTCTCGTTCGAAATTCCTTCACTCTCCCGC
TTCCGTGTCAATGCATTCAACCAAGAGCGTGGTGCTGGTGCCGTGTTTCGCACCATTCCGAATAAGGTGATGACATTGGA
CGAACTCGGCTGTTTGCCGGTGTTTCGCAAACTCATTGAAGAGCCGCAGGGATTGATTCTGGTGACTGGGCCGACTGGCT
CTGGAAAATCGACCACCCTCGCAGCCATGATCGACCATATCAACAAAAATACTCACGGGCATATTCTCACGATAGAGGAC
CCGATTGAGTTCGTTCACACCTCACAGAAGTGCTTGATTAACCAACGTGAGGTACATCGCGATACTCACGACTTTAACAA
AGCGCTCAGCTCAGCACTACGCGAAGATCCAGACATCATCCTGATTGGAGAATTGCGTGACCTGGAAACGATCCGTCTAG
CACTGACTGCGGCCGAAACTGGTCACTTGGTATTTGGCACCCTGCACACCAATTCAGCAGCGAAAAGTATTAACCGCATC
ATCGACGTGTTTCCCGCTGCTGAAAAACCGATGGTCCGCTCAATGCTTTCCGAATCGCTCTGCGGGATCATCTCGCAAAT
GTTGTTGAAAAAAGTTGGTGGTGGACGTACCGCAGCCTGGGAAATTATGGTTGGCACCCCCGCAATCCGAAATTTGATCC
GTGAGGATAAAGTCGCACAGATGTATTCATCCATCCAAACTGGCCAGCAATATGGCATGCAGACCCTTGACCAGCATTTA
CAGGATCTCATCAAACGCAACCTGATCACACGACAGCAAGCACGTGAATACGCCAAGGATAAAGCGAATTTTTGA
ATGGATATTGCTGAACTGTTAGCGTTTTCAGTCAAAAACAATGCTTCGGACCTGCACCTATCAGCAGGCCTGCCACCAAT
GATCAGGGTGGACGGCGATGTACGCCGTATCAATATCCCTGCATTCGACCATAAGCAGGTGCAATCGCTGATTTACGACA
TCATGTCGGACAAGCAACGACGCGACTACGAGGAAGCACTTGAGACGGATTTCTCGTTCGAAATTCCTTCACTCTCCCGC
TTCCGTGTCAATGCATTCAACCAAGAGCGTGGTGCTGGTGCCGTGTTTCGCACCATTCCGAATAAGGTGATGACATTGGA
CGAACTCGGCTGTTTGCCGGTGTTTCGCAAACTCATTGAAGAGCCGCAGGGATTGATTCTGGTGACTGGGCCGACTGGCT
CTGGAAAATCGACCACCCTCGCAGCCATGATCGACCATATCAACAAAAATACTCACGGGCATATTCTCACGATAGAGGAC
CCGATTGAGTTCGTTCACACCTCACAGAAGTGCTTGATTAACCAACGTGAGGTACATCGCGATACTCACGACTTTAACAA
AGCGCTCAGCTCAGCACTACGCGAAGATCCAGACATCATCCTGATTGGAGAATTGCGTGACCTGGAAACGATCCGTCTAG
CACTGACTGCGGCCGAAACTGGTCACTTGGTATTTGGCACCCTGCACACCAATTCAGCAGCGAAAAGTATTAACCGCATC
ATCGACGTGTTTCCCGCTGCTGAAAAACCGATGGTCCGCTCAATGCTTTCCGAATCGCTCTGCGGGATCATCTCGCAAAT
GTTGTTGAAAAAAGTTGGTGGTGGACGTACCGCAGCCTGGGAAATTATGGTTGGCACCCCCGCAATCCGAAATTTGATCC
GTGAGGATAAAGTCGCACAGATGTATTCATCCATCCAAACTGGCCAGCAATATGGCATGCAGACCCTTGACCAGCATTTA
CAGGATCTCATCAAACGCAACCTGATCACACGACAGCAAGCACGTGAATACGCCAAGGATAAAGCGAATTTTTGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilT | Pseudomonas stutzeri DSM 10701 |
75.872 |
100 |
0.759 |
| pilT | Pseudomonas aeruginosa PAK |
74.709 |
100 |
0.747 |
| pilT | Acinetobacter nosocomialis M2 |
74.419 |
100 |
0.744 |
| pilT | Acinetobacter baumannii D1279779 |
74.419 |
100 |
0.744 |
| pilT | Acinetobacter baumannii strain A118 |
74.419 |
100 |
0.744 |
| pilT | Acinetobacter baylyi ADP1 |
74.419 |
100 |
0.744 |
| pilT | Legionella pneumophila strain Lp02 |
71.221 |
100 |
0.712 |
| pilT | Legionella pneumophila strain ERS1305867 |
71.221 |
100 |
0.712 |
| pilT | Vibrio cholerae O1 biovar El Tor strain E7946 |
68.06 |
97.384 |
0.663 |
| pilT | Vibrio cholerae strain A1552 |
68.06 |
97.384 |
0.663 |
| pilT | Neisseria gonorrhoeae MS11 |
62.463 |
99.128 |
0.619 |
| pilT | Neisseria meningitidis 8013 |
62.17 |
99.128 |
0.616 |
| pilT | Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539 |
48.986 |
100 |
0.491 |
| pilU | Pseudomonas stutzeri DSM 10701 |
40.698 |
100 |
0.407 |
| pilU | Vibrio cholerae strain A1552 |
39.826 |
100 |
0.398 |
| pilU | Acinetobacter baylyi ADP1 |
39.595 |
100 |
0.398 |