Detailed information    

insolico Bioinformatically predicted

Overview


Name   comFC/cflB   Type   Machinery gene
Locus tag   BSR19_RS01895 Genome accession   NZ_CP018187
Coordinates   359101..359763 (+) Length   220 a.a.
NCBI ID   WP_156246370.1    Uniprot ID   -
Organism   Streptococcus salivarius strain ICDC2     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context


Location: 354101..364763
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BSR19_RS01870 (BSR19_01870) - 354440..355150 (+) 711 WP_002883761.1 ABC transporter ATP-binding protein -
  BSR19_RS01875 (BSR19_01875) - 355285..355944 (+) 660 WP_037600377.1 CBS and ACT domain-containing protein -
  BSR19_RS01880 (BSR19_01880) cysK 356092..357018 (-) 927 WP_002883742.1 cysteine synthase A -
  BSR19_RS01885 (BSR19_01885) - 357120..357746 (-) 627 WP_060973192.1 YigZ family protein -
  BSR19_RS01890 (BSR19_01890) comFA/cflA 357801..359120 (+) 1320 WP_156246369.1 DEAD/DEAH box helicase Machinery gene
  BSR19_RS01895 (BSR19_01895) comFC/cflB 359101..359763 (+) 663 WP_156246370.1 ComF family protein Machinery gene
  BSR19_RS01900 (BSR19_01900) hpf 359842..360390 (+) 549 WP_002883786.1 ribosome hibernation-promoting factor, HPF/YfiA family -

Sequence


Protein


Download         Length: 220 a.a.        Molecular weight: 26121.42 Da        Isoelectric Point: 8.5995

>NTDB_id=173596 BSR19_RS01895 WP_156246370.1 359101..359763(+) (comFC/cflB) [Streptococcus salivarius strain ICDC2]
MKCLLCNDWIESLPKLRDLIMFNQRKEYSCRSCKHQFKNLSKERCQNCNKELYGDACIDCKLWMKKGYIPKHLAIYRYEE
NMKEYFSRYKFMGDYCLRKIFQQDIKNNLKPFLKKGYTIVPVPLSEERLAERGFNQVEGLIEGIPYRDIFEKRDIEKQSS
KTREERLSQDNAFCLKEGINLPDKIIIVDDIYTTGSTLYQMVQLLEGIGIKEVLTFSLAR

Nucleotide


Download         Length: 663 bp        

>NTDB_id=173596 BSR19_RS01895 WP_156246370.1 359101..359763(+) (comFC/cflB) [Streptococcus salivarius strain ICDC2]
ATGAAGTGTCTGCTATGTAATGATTGGATTGAATCACTACCAAAATTAAGAGACCTTATTATGTTTAACCAAAGAAAAGA
GTACTCTTGCCGATCTTGTAAACATCAGTTTAAAAACCTCTCAAAAGAAAGATGTCAAAATTGTAATAAAGAGTTATATG
GAGATGCTTGTATTGATTGTAAACTTTGGATGAAAAAAGGCTATATTCCTAAGCACCTTGCTATTTATCGATATGAGGAA
AATATGAAAGAGTATTTTAGTCGCTATAAATTTATGGGAGACTATTGTCTTAGAAAAATATTTCAACAAGATATTAAAAA
CAACTTAAAACCATTTTTGAAGAAAGGTTATACCATAGTGCCAGTCCCATTATCGGAAGAACGCTTGGCAGAAAGAGGAT
TCAACCAAGTTGAGGGATTGATAGAGGGAATTCCCTATCGGGATATCTTTGAGAAAAGAGATATTGAGAAGCAATCCTCA
AAAACACGCGAGGAGCGTCTAAGTCAAGATAATGCTTTCTGTCTCAAGGAAGGTATAAATCTACCAGATAAGATTATTAT
AGTGGATGATATCTATACAACGGGTTCCACTTTATATCAGATGGTTCAACTGTTAGAAGGTATAGGTATTAAAGAAGTTT
TGACCTTTTCACTAGCTAGATAA

Domains



No domain identified.



Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC/cflB Streptococcus mitis NCTC 12261

44.595

100

0.45

  comFC/cflB Streptococcus pneumoniae Rx1

44.144

100

0.445

  comFC/cflB Streptococcus pneumoniae D39

44.144

100

0.445

  comFC/cflB Streptococcus pneumoniae R6

44.144

100

0.445

  comFC/cflB Streptococcus pneumoniae TIGR4

44.144

100

0.445

  comFC/cflB Streptococcus mitis SK321

43.694

100

0.441


Multiple sequence alignment