Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilU   Type   Machinery gene
Locus tag   AL552_RS13620 Genome accession   NZ_CP014094
Coordinates   2571050..2572156 (-) Length   368 a.a.
NCBI ID   WP_005381016.1    Uniprot ID   A0A2I3C9Z5
Organism   Vibrio diabolicus strain FDAARGOS_96     
Function   type IV pilus retraction (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2566050..2577156
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AL552_RS13590 (AL552_21745) - 2566680..2567177 (+) 498 WP_012841396.1 SprT family zinc-dependent metalloprotease -
  AL552_RS13595 (AL552_21750) endA 2567328..2568023 (+) 696 WP_104969809.1 deoxyribonuclease I -
  AL552_RS13600 (AL552_21755) rsmE 2568140..2568871 (+) 732 WP_005393970.1 16S rRNA (uracil(1498)-N(3))-methyltransferase -
  AL552_RS13605 (AL552_21760) gshB 2568886..2569836 (+) 951 WP_006743090.1 glutathione synthase -
  AL552_RS13610 (AL552_21765) - 2569965..2570528 (+) 564 WP_065646158.1 YqgE/AlgH family protein -
  AL552_RS13615 (AL552_21770) ruvX 2570563..2570988 (+) 426 WP_005381017.1 Holliday junction resolvase RuvX -
  AL552_RS13620 (AL552_21775) pilU 2571050..2572156 (-) 1107 WP_005381016.1 PilT/PilU family type 4a pilus ATPase Machinery gene
  AL552_RS13625 (AL552_21780) pilT 2572187..2573227 (-) 1041 WP_005381015.1 type IV pilus twitching motility protein PilT Machinery gene
  AL552_RS13630 (AL552_21785) - 2573256..2573957 (+) 702 WP_104969810.1 YggS family pyridoxal phosphate-dependent enzyme -
  AL552_RS13635 (AL552_21790) proC 2574115..2574933 (+) 819 WP_104969811.1 pyrroline-5-carboxylate reductase -
  AL552_RS13640 (AL552_21795) - 2574976..2575533 (+) 558 WP_012841393.1 YggT family protein -
  AL552_RS13645 (AL552_21800) yggU 2575533..2575823 (+) 291 WP_104969812.1 DUF167 family protein YggU -
  AL552_RS13650 (AL552_21805) - 2575951..2576382 (+) 432 WP_005393982.1 DUF4426 domain-containing protein -
  AL552_RS13655 (AL552_21810) - 2576500..2577102 (+) 603 WP_104969813.1 XTP/dITP diphosphatase -

Sequence

Protein


Download         Length: 368 a.a.        Molecular weight: 41254.36 Da        Isoelectric Point: 6.5943

>NTDB_id=168335 AL552_RS13620 WP_005381016.1 2571050..2572156(-) (pilU) [Vibrio diabolicus strain FDAARGOS_96]
MDLDKFLEGMLALKASDLYITVGAPILFRVDGELRPQGEKLTESDVAALLDSAMEPDRRQEFRKSRESNFAIVRDCGRFR
VSAFFQRELPGAVIRRIETNIPTFEQLKLPLVLQDLAIAKRGLVLVVGATGSGKSTTMAAMTGYRNSNKTGHILTVEDPI
EFVHEHKRCIVTQREVGLDTESYEVALKNSLRQAPDMILIGEIRSRETMEYAMTFAETGHLCMATLHANNANQALERILH
LVPKDQKEQFLFDLSMNLKGVVGQQLIRDKNGQGRHGVFEILLNSPRVSDLIRRGDLHELKSTMARSNEFGMLTFDQSLY
KLVMQGKISEEDALHSADSANDLRLMLKTQRGEAFSTGSLANVKIDMD

Nucleotide


Download         Length: 1107 bp        

>NTDB_id=168335 AL552_RS13620 WP_005381016.1 2571050..2572156(-) (pilU) [Vibrio diabolicus strain FDAARGOS_96]
ATGGATCTAGATAAATTTCTCGAAGGCATGCTGGCGCTGAAAGCGTCGGATCTTTACATCACGGTTGGAGCGCCAATTCT
ATTTCGTGTGGATGGCGAATTGCGACCACAAGGTGAAAAACTCACCGAGAGTGATGTAGCGGCATTACTCGACAGTGCTA
TGGAGCCAGATCGGCGTCAGGAATTTCGTAAAAGTCGTGAGTCGAATTTTGCCATTGTGAGAGATTGTGGCCGCTTCCGT
GTTAGTGCCTTTTTTCAACGGGAATTACCGGGTGCGGTGATTCGTCGTATTGAAACCAATATTCCCACCTTTGAGCAATT
AAAGTTACCGTTAGTGTTGCAAGATTTAGCGATAGCCAAGCGTGGTTTGGTGCTGGTGGTTGGTGCTACTGGGTCAGGTA
AATCCACCACAATGGCGGCAATGACGGGCTATCGAAACAGCAACAAGACGGGGCACATTTTGACGGTCGAAGATCCGATC
GAATTCGTGCATGAGCACAAGCGCTGTATCGTGACTCAACGCGAAGTTGGGTTAGATACGGAAAGCTATGAAGTTGCGCT
TAAAAACTCGCTGCGCCAAGCACCAGATATGATTTTGATTGGTGAGATCCGTAGCCGTGAAACAATGGAATACGCGATGA
CCTTCGCCGAAACGGGCCATTTGTGTATGGCAACGTTGCACGCCAACAATGCCAACCAAGCTTTAGAGCGCATTCTTCAC
TTGGTACCGAAAGATCAAAAAGAACAATTCTTGTTCGACTTGTCGATGAACCTAAAAGGCGTGGTTGGTCAGCAGCTGAT
CCGAGATAAAAATGGGCAGGGGCGTCATGGTGTGTTTGAGATCTTGCTAAATAGCCCACGTGTGTCGGATTTGATCCGTC
GCGGAGATTTGCATGAGTTGAAGTCAACCATGGCTCGCTCAAATGAGTTTGGTATGCTGACGTTCGATCAATCTCTTTAT
AAGTTGGTGATGCAAGGTAAGATCAGCGAAGAGGATGCGCTGCACAGTGCCGACTCGGCGAATGATCTGCGCTTGATGTT
GAAAACGCAGCGTGGTGAAGCATTCTCTACGGGCAGTTTGGCGAACGTTAAGATCGATATGGATTAA

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(111-269)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2I3C9Z5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilU Vibrio cholerae strain A1552

82.337

100

0.823
  pilU Pseudomonas stutzeri DSM 10701

58.571

95.109

0.557
  pilU Acinetobacter baylyi ADP1

54.701

95.38

0.522
  pilT Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

45.231

88.315

0.399
  pilT Legionella pneumophila strain Lp02

42.478

92.12

0.391
  pilT Legionella pneumophila strain ERS1305867

42.478

92.12

0.391
  pilT Acinetobacter nosocomialis M2

41.888

92.12

0.386
  pilT Acinetobacter baumannii strain A118

41.888

92.12

0.386
  pilT Pseudomonas aeruginosa PAK

41.888

92.12

0.386
  pilT Acinetobacter baumannii D1279779

41.888

92.12

0.386
  pilT Acinetobacter baylyi ADP1

41.692

89.946

0.375
  pilT Pseudomonas stutzeri DSM 10701

40.708

92.12

0.375
  pilT Vibrio cholerae O1 biovar El Tor strain E7946

41.317

90.761

0.375
  pilT Vibrio cholerae strain A1552

41.317

90.761

0.375
  pilT Neisseria gonorrhoeae MS11

40.06

90.217

0.361
  pilT Neisseria meningitidis 8013

40.06

90.217

0.361

Multiple sequence alignment