Detailed information
Bioinformatically predicted
Overview
| Name | pilT | Type | Machinery gene |
| Locus tag | AT984_RS15255 | Genome accession | NZ_CP013692 |
| Coordinates | 3520549..3521592 (-) | Length | 347 a.a. |
| NCBI ID | WP_058720827.1 | Uniprot ID | A0A0U3EWH1 |
| Organism | Paucibacter sp. KCTC 42545 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| IS/Tn | 3522499..3523449 | 3520549..3521592 | flank | 907 |
Gene organization within MGE regions
Location: 3520549..3523449
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| AT984_RS15255 (AT984_15255) | pilT | 3520549..3521592 (-) | 1044 | WP_058720827.1 | type IV pilus twitching motility protein PilT | Machinery gene |
| AT984_RS15260 (AT984_15260) | - | 3521643..3522353 (+) | 711 | Protein_3032 | YggS family pyridoxal phosphate-dependent enzyme | - |
| AT984_RS15265 (AT984_15265) | - | 3522499..3523449 (+) | 951 | WP_058720828.1 | IS481 family transposase | - |
Sequence
Protein
Download Length: 347 a.a. Molecular weight: 38219.77 Da Isoelectric Point: 7.0359
>NTDB_id=164105 AT984_RS15255 WP_058720827.1 3520549..3521592(-) (pilT) [Paucibacter sp. KCTC 42545]
MDITQLLAFSVKNKASDLHLSAGLPPMIRVNGDVRRINVEALEHRQVHDMVYDIMNDSQRKIYEESLEVDFSFEIQGLAR
FRVNAFNQNRGAGAVFRTIPSKILSLEQLNAPKIFAELALRPRGLVLVTGPTGSGKSTTLAGMVNHLNENEYGHILTIED
PIEFVHESKKSLINQREVGPHTMSFANALKSALREDPDAVLVGEMRDLETIRLALTAAETGHLVFGTLHTSSAAKTVDRI
VDVFPAAEKEMVRAMVSESLVAVISQTLCKLKDGSGRVAAHEIMLGNSAIRNLIRENKVAQMYSAIQTGNNQGMQTLDQN
LTDLVRRNIISPAEARAKAKFPDNFPG
MDITQLLAFSVKNKASDLHLSAGLPPMIRVNGDVRRINVEALEHRQVHDMVYDIMNDSQRKIYEESLEVDFSFEIQGLAR
FRVNAFNQNRGAGAVFRTIPSKILSLEQLNAPKIFAELALRPRGLVLVTGPTGSGKSTTLAGMVNHLNENEYGHILTIED
PIEFVHESKKSLINQREVGPHTMSFANALKSALREDPDAVLVGEMRDLETIRLALTAAETGHLVFGTLHTSSAAKTVDRI
VDVFPAAEKEMVRAMVSESLVAVISQTLCKLKDGSGRVAAHEIMLGNSAIRNLIRENKVAQMYSAIQTGNNQGMQTLDQN
LTDLVRRNIISPAEARAKAKFPDNFPG
Nucleotide
Download Length: 1044 bp
>NTDB_id=164105 AT984_RS15255 WP_058720827.1 3520549..3521592(-) (pilT) [Paucibacter sp. KCTC 42545]
ATGGACATCACCCAACTGCTTGCATTCTCGGTCAAGAACAAGGCCTCGGACTTGCACCTCTCCGCCGGTTTGCCGCCGAT
GATTCGCGTTAATGGCGATGTGCGCCGCATCAATGTCGAGGCGCTGGAACACCGCCAGGTGCACGACATGGTGTACGACA
TCATGAATGACAGCCAGCGCAAGATTTACGAAGAATCGCTGGAAGTGGACTTCTCCTTCGAGATCCAAGGCCTGGCCCGT
TTCCGCGTCAATGCCTTCAATCAGAACCGCGGTGCAGGCGCCGTGTTCCGGACCATTCCGAGCAAGATCCTCTCGCTGGA
GCAGCTGAACGCGCCGAAGATTTTTGCCGAGCTGGCCCTGCGCCCGCGCGGCCTGGTGCTGGTGACCGGCCCGACGGGCT
CGGGCAAGTCGACCACCCTGGCCGGCATGGTCAATCACCTGAACGAAAACGAGTACGGTCACATCCTGACCATCGAGGAC
CCGATCGAGTTCGTGCATGAGTCCAAGAAGAGCCTGATCAACCAGCGCGAGGTGGGCCCCCACACCATGAGCTTCGCCAA
TGCGCTGAAGTCGGCGCTGCGTGAAGACCCGGACGCGGTGCTGGTGGGTGAAATGCGTGACCTGGAAACCATTCGCCTGG
CGCTGACGGCGGCGGAAACCGGCCACTTGGTCTTCGGCACTCTGCACACCAGCTCGGCCGCCAAAACGGTGGACCGTATC
GTTGACGTGTTCCCGGCGGCTGAAAAAGAGATGGTGCGGGCGATGGTGTCCGAGTCGCTGGTGGCGGTGATTTCTCAAAC
GCTGTGCAAGCTCAAGGACGGCTCGGGTCGGGTGGCGGCGCATGAAATCATGTTGGGCAACTCGGCCATCCGCAACTTGA
TCCGCGAGAACAAGGTGGCGCAGATGTACTCGGCCATCCAGACCGGCAATAACCAGGGCATGCAAACCCTGGACCAGAAC
CTGACCGATCTGGTGCGCCGCAACATCATCTCGCCCGCCGAGGCCCGCGCCAAGGCCAAGTTCCCGGACAACTTCCCGGG
CTAA
ATGGACATCACCCAACTGCTTGCATTCTCGGTCAAGAACAAGGCCTCGGACTTGCACCTCTCCGCCGGTTTGCCGCCGAT
GATTCGCGTTAATGGCGATGTGCGCCGCATCAATGTCGAGGCGCTGGAACACCGCCAGGTGCACGACATGGTGTACGACA
TCATGAATGACAGCCAGCGCAAGATTTACGAAGAATCGCTGGAAGTGGACTTCTCCTTCGAGATCCAAGGCCTGGCCCGT
TTCCGCGTCAATGCCTTCAATCAGAACCGCGGTGCAGGCGCCGTGTTCCGGACCATTCCGAGCAAGATCCTCTCGCTGGA
GCAGCTGAACGCGCCGAAGATTTTTGCCGAGCTGGCCCTGCGCCCGCGCGGCCTGGTGCTGGTGACCGGCCCGACGGGCT
CGGGCAAGTCGACCACCCTGGCCGGCATGGTCAATCACCTGAACGAAAACGAGTACGGTCACATCCTGACCATCGAGGAC
CCGATCGAGTTCGTGCATGAGTCCAAGAAGAGCCTGATCAACCAGCGCGAGGTGGGCCCCCACACCATGAGCTTCGCCAA
TGCGCTGAAGTCGGCGCTGCGTGAAGACCCGGACGCGGTGCTGGTGGGTGAAATGCGTGACCTGGAAACCATTCGCCTGG
CGCTGACGGCGGCGGAAACCGGCCACTTGGTCTTCGGCACTCTGCACACCAGCTCGGCCGCCAAAACGGTGGACCGTATC
GTTGACGTGTTCCCGGCGGCTGAAAAAGAGATGGTGCGGGCGATGGTGTCCGAGTCGCTGGTGGCGGTGATTTCTCAAAC
GCTGTGCAAGCTCAAGGACGGCTCGGGTCGGGTGGCGGCGCATGAAATCATGTTGGGCAACTCGGCCATCCGCAACTTGA
TCCGCGAGAACAAGGTGGCGCAGATGTACTCGGCCATCCAGACCGGCAATAACCAGGGCATGCAAACCCTGGACCAGAAC
CTGACCGATCTGGTGCGCCGCAACATCATCTCGCCCGCCGAGGCCCGCGCCAAGGCCAAGTTCCCGGACAACTTCCCGGG
CTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilT | Acinetobacter nosocomialis M2 |
75.072 |
99.424 |
0.746 |
| pilT | Acinetobacter baumannii D1279779 |
75.072 |
99.424 |
0.746 |
| pilT | Acinetobacter baumannii strain A118 |
75.072 |
99.424 |
0.746 |
| pilT | Pseudomonas aeruginosa PAK |
74.203 |
99.424 |
0.738 |
| pilT | Pseudomonas stutzeri DSM 10701 |
73.043 |
99.424 |
0.726 |
| pilT | Acinetobacter baylyi ADP1 |
72.464 |
99.424 |
0.72 |
| pilT | Neisseria gonorrhoeae MS11 |
70 |
97.983 |
0.686 |
| pilT | Neisseria meningitidis 8013 |
70 |
97.983 |
0.686 |
| pilT | Legionella pneumophila strain Lp02 |
70.206 |
97.695 |
0.686 |
| pilT | Legionella pneumophila strain ERS1305867 |
70.206 |
97.695 |
0.686 |
| pilT | Vibrio cholerae O1 biovar El Tor strain E7946 |
66.568 |
97.406 |
0.648 |
| pilT | Vibrio cholerae strain A1552 |
66.568 |
97.406 |
0.648 |
| pilT | Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539 |
51.014 |
99.424 |
0.507 |
| pilU | Acinetobacter baylyi ADP1 |
40.751 |
99.712 |
0.406 |
| pilU | Vibrio cholerae strain A1552 |
40.896 |
96.542 |
0.395 |
| pilU | Pseudomonas stutzeri DSM 10701 |
40.299 |
96.542 |
0.389 |