Detailed information NTG0162160

Bioinformatically predicted

Overview

• Name: pilT
• Type: Machinery gene
• Locus tag: ATY38_RS05835
• Genome accession: NZ_CP013341
• Coordinates: 1263967..1265010 (-)
• Length: 347 a.a.
• NCBI ID: WP_062558483.1
• Uniprot ID: -
• Organism: Nitrosomonas ureae strain Nm10
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type	MGE coordinates	Gene coordinates	Relative position	Distance (bp)
IS/Tn	1265277..1266026	1263967..1265010	flank	267

Gene organization within MGE regions

Location: 1263967..1266026

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ATY38_RS05835 (ATY38_05830)	pilT	1263967..1265010 (-)	1044	WP_062558483.1	type IV pilus twitching motility protein PilT	Machinery gene
ATY38_RS05840 (ATY38_05835)	-	1265277..1266026 (+)	750	WP_082632977.1	IS5 family transposase	-

Sequence

Protein

• Length: 347 a.a.
• Molecular weight: 38517.37 Da
• Isoelectric Point: 7.2655

>NTDB_id=162160 ATY38_RS05835 WP_062558483.1 1263967..1265010(-) (pilT) [Nitrosomonas ureae strain Nm10]
MNIVELLAFVVKNNASDLHLSAGMSPMIRVHGDIRRINLPEMSHKDVHAMIYDIMNDGQRKFYEEHLECDFSFAIPNLAR
FRVNAFNTQRGAAAVMRTIPSKVLSLEDLRAPKIFAEIAKQPRGVVLVTGPTGSGKSTTLAAMINDINENEYGHILTLED
PIEFVHESKKCLINQREVGRDTLSFSNALRSALREDPDIILVGELRDLETIRLAMTAAETGHLVFGTLHTSSAAKTIDRV
IDVFPAEEKEMIRAMLSESLRAVISQALLKTKDGKGRVAAHEIMIGTPAIRNLIREGKVAQMYSAIQTGQNSGMQTLDQN
LTELVKRNVVSVAEARTQAMNKDNFRV

Nucleotide

• Length: 1044 bp

>NTDB_id=162160 ATY38_RS05835 WP_062558483.1 1263967..1265010(-) (pilT) [Nitrosomonas ureae strain Nm10]
ATGAATATTGTTGAGCTACTTGCTTTTGTGGTTAAAAACAACGCTTCCGATTTGCATTTATCTGCGGGCATGTCACCGAT
GATTCGGGTGCACGGTGACATCCGTCGCATCAATTTGCCGGAAATGAGCCATAAAGATGTCCACGCGATGATATATGACA
TTATGAATGATGGTCAGCGCAAATTTTATGAAGAGCATCTGGAATGCGATTTTTCCTTCGCGATACCGAATCTTGCCCGT
TTTCGCGTGAATGCATTCAATACACAACGCGGCGCAGCGGCGGTCATGCGGACGATTCCATCCAAGGTGCTGAGTCTGGA
AGATTTACGCGCACCCAAGATTTTCGCTGAAATTGCCAAGCAACCGCGCGGCGTTGTATTAGTGACAGGTCCCACCGGTT
CAGGAAAATCGACTACGCTGGCAGCAATGATCAATGACATCAATGAAAATGAGTATGGCCATATATTGACACTTGAAGAT
CCGATTGAATTTGTGCACGAGAGCAAAAAATGCCTGATCAATCAGCGCGAAGTGGGACGGGATACATTAAGCTTCTCCAA
TGCATTGCGTTCCGCATTACGTGAAGATCCCGACATTATCCTGGTGGGTGAGTTGCGTGATCTTGAAACCATCCGCTTGG
CGATGACCGCCGCCGAAACCGGTCACTTGGTATTTGGTACATTGCATACCAGCTCGGCTGCCAAAACCATCGACCGTGTC
ATCGACGTGTTTCCGGCGGAAGAAAAAGAAATGATTCGCGCGATGCTATCGGAATCCTTGCGCGCGGTAATTTCGCAGGC
ACTGCTAAAAACAAAGGATGGCAAAGGGCGCGTCGCCGCGCATGAAATTATGATTGGTACCCCGGCGATCAGAAATCTAA
TCCGTGAGGGTAAGGTTGCGCAGATGTACTCGGCGATACAAACAGGTCAGAACTCAGGCATGCAAACACTGGATCAAAAC
CTGACCGAGCTGGTAAAACGCAATGTCGTATCCGTCGCCGAGGCTAGAACTCAAGCAATGAATAAGGACAATTTCAGAGT
TTAA

Domains

Predicted by InterproScan.

• Type II/IV secretion system protein (T2SSE) (11-270)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilT	Acinetobacter baumannii strain A118	76.812	99.424	0.764
pilT	Acinetobacter baumannii D1279779	76.812	99.424	0.764
pilT	Acinetobacter nosocomialis M2	76.812	99.424	0.764
pilT	Legionella pneumophila strain Lp02	73.913	99.424	0.735
pilT	Legionella pneumophila strain ERS1305867	73.913	99.424	0.735
pilT	Pseudomonas stutzeri DSM 10701	73.623	99.424	0.732
pilT	Acinetobacter baylyi ADP1	73.623	99.424	0.732
pilT	Pseudomonas aeruginosa PAK	73.333	99.424	0.729
pilT	Neisseria gonorrhoeae MS11	70.145	99.424	0.697
pilT	Neisseria meningitidis 8013	70.145	99.424	0.697
pilT	Vibrio cholerae O1 biovar El Tor strain E7946	67.751	97.406	0.66
pilT	Vibrio cholerae strain A1552	67.751	97.406	0.66
pilT	Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539	50.145	99.424	0.499
pilU	Acinetobacter baylyi ADP1	41.429	100	0.418
pilU	Pseudomonas stutzeri DSM 10701	40.346	100	0.403
pilU	Vibrio cholerae strain A1552	40.058	100	0.401