Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilT   Type   Machinery gene
Locus tag   NPD3_RS06105 Genome accession   NZ_CP013247
Coordinates   1305206..1306258 (-) Length   350 a.a.
NCBI ID   WP_003386380.1    Uniprot ID   A0A2I4MRH7
Organism   Clostridium botulinum strain CDC_69094     
Function   mediate the depolymerization of the type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1300206..1311258
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NPD3_RS06085 (NPD3_1165) ftsZ 1300731..1301840 (-) 1110 WP_003386373.1 cell division protein FtsZ -
  NPD3_RS06090 (NPD3_1166) ftsA 1301863..1303116 (-) 1254 WP_033065928.1 cell division protein FtsA -
  NPD3_RS06095 (NPD3_1167) - 1303273..1304547 (-) 1275 WP_003386376.1 glycosyltransferase family 2 protein -
  NPD3_RS19110 (NPD3_1168) - 1304985..1305128 (+) 144 WP_061318845.1 hypothetical protein -
  NPD3_RS06105 (NPD3_1169) pilT 1305206..1306258 (-) 1053 WP_003386380.1 type IV pilus twitching motility protein PilT Machinery gene
  NPD3_RS06110 (NPD3_1170) aroE 1306260..1307036 (-) 777 WP_061318846.1 shikimate dehydrogenase -
  NPD3_RS06115 (NPD3_1171) sigK 1307175..1307879 (-) 705 WP_004440491.1 RNA polymerase sporulation sigma factor SigK -
  NPD3_RS06120 (NPD3_1172) - 1308089..1308268 (-) 180 WP_003386384.1 aspartyl-phosphate phosphatase Spo0E family protein -
  NPD3_RS19115 (NPD3_1173) - 1308713..1308850 (-) 138 WP_072570669.1 hypothetical protein -
  NPD3_RS06130 (NPD3_1174) - 1309241..1309495 (+) 255 WP_003386388.1 hypothetical protein -
  NPD3_RS19575 - 1309702..1309997 (-) 296 Protein_1189 hypothetical protein -
  NPD3_RS19515 - 1310083..1310217 (+) 135 WP_257786607.1 hypothetical protein -
  NPD3_RS06140 (NPD3_1175) - 1310563..1311231 (-) 669 WP_072570671.1 YsnF/AvaK domain-containing protein -

Sequence

Protein


Download         Length: 350 a.a.        Molecular weight: 39054.11 Da        Isoelectric Point: 8.0876

>NTDB_id=161155 NPD3_RS06105 WP_003386380.1 1305206..1306258(-) (pilT) [Clostridium botulinum strain CDC_69094]
MKQLKELLEKTINFGASDLHLSVGVEPTIRINGQLSKIFKEKLTPEDTNNYAKEILGEEFEDLLKKGEIDTSYSISGLGR
FRVSVFKQRGSIAISLRVVSLKIPNLNELKLPDIVKELTNKKRGLILVTGPTGSGKSTTLAAMINEINNTRSNHIITLED
PIEFLHKHNKCIINQREIGRDTFSYKSALKAALREDPDVILIGELRDLEDISIALTAAETGHLVFSTLHTIGGAKTIDRI
VNVFPPHQQEQIRIQVASVLEGIISQQLVHKIDGGRIAALETMVTTNAIRNMIREGKTYQIESSIQTGSKYGMKTMDMSL
AELYKREIISYDTALNYSVDKDLITKIINL

Nucleotide


Download         Length: 1053 bp        

>NTDB_id=161155 NPD3_RS06105 WP_003386380.1 1305206..1306258(-) (pilT) [Clostridium botulinum strain CDC_69094]
TTGAAACAATTAAAAGAATTATTAGAAAAAACTATTAACTTTGGTGCTTCAGATTTACATTTATCCGTAGGAGTAGAACC
AACTATAAGAATAAATGGACAATTAAGTAAAATATTTAAAGAAAAACTTACACCAGAAGATACTAATAATTATGCCAAAG
AAATATTAGGTGAAGAATTTGAAGATTTATTGAAAAAAGGAGAAATAGATACATCCTATTCTATATCGGGCTTAGGTAGA
TTTAGAGTAAGCGTGTTTAAACAAAGAGGAAGTATAGCTATTTCTTTAAGGGTTGTAAGTTTGAAGATCCCTAACTTAAA
TGAACTAAAATTGCCTGATATAGTAAAGGAATTAACCAATAAAAAAAGAGGCCTTATTTTAGTAACGGGTCCTACAGGTT
CAGGCAAAAGTACTACTTTAGCAGCTATGATTAATGAAATTAATAATACTAGGTCTAATCATATAATAACTTTAGAAGAT
CCAATAGAATTTTTACATAAACATAACAAATGTATAATAAATCAAAGAGAGATAGGTAGGGATACTTTTAGTTATAAAAG
TGCTTTAAAAGCAGCATTAAGAGAAGATCCGGATGTAATATTAATAGGAGAGCTTAGAGATTTAGAAGATATTTCTATAG
CTTTAACAGCTGCAGAAACAGGGCATTTAGTATTTTCTACTTTGCATACTATAGGAGGGGCTAAAACTATAGATAGAATT
GTTAATGTATTTCCGCCACATCAACAGGAGCAGATAAGAATACAAGTAGCAAGTGTGTTAGAAGGAATAATAAGTCAACA
ATTAGTACATAAAATTGATGGAGGAAGAATAGCAGCCTTAGAGACTATGGTAACTACAAATGCCATAAGAAATATGATAA
GGGAAGGAAAAACTTATCAAATAGAATCTTCCATACAAACTGGATCTAAATATGGAATGAAAACTATGGATATGTCCTTA
GCAGAGCTATATAAAAGAGAAATTATAAGCTACGATACTGCATTAAATTATTCAGTAGATAAGGATTTAATTACAAAAAT
AATTAATTTATAA

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(92-271)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2I4MRH7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilT Acinetobacter baylyi ADP1

50.751

95.143

0.483
  pilT Legionella pneumophila strain Lp02

48.696

98.571

0.48
  pilT Legionella pneumophila strain ERS1305867

48.696

98.571

0.48
  pilT Pseudomonas aeruginosa PAK

49.405

96

0.474
  pilT Acinetobacter nosocomialis M2

49.55

95.143

0.471
  pilT Acinetobacter baumannii D1279779

49.55

95.143

0.471
  pilT Acinetobacter baumannii strain A118

49.55

95.143

0.471
  pilT Vibrio cholerae O1 biovar El Tor strain E7946

50

94.286

0.471
  pilT Vibrio cholerae strain A1552

50

94.286

0.471
  pilT Pseudomonas stutzeri DSM 10701

48.81

96

0.469
  pilT Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

46.264

99.429

0.46
  pilT Neisseria meningitidis 8013

47.463

95.714

0.454
  pilT Neisseria gonorrhoeae MS11

47.463

95.714

0.454
  pilU Acinetobacter baylyi ADP1

41.124

96.571

0.397
  pilU Pseudomonas stutzeri DSM 10701

41.194

95.714

0.394
  pilU Vibrio cholerae strain A1552

38.643

96.857

0.374

Multiple sequence alignment