Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGC/cglC   Type   Machinery gene
Locus tag   RN80_RS01095 Genome accession   NZ_CP012646
Coordinates   193872..194195 (-) Length   107 a.a.
NCBI ID   WP_060627216.1    Uniprot ID   -
Organism   Streptococcus mitis strain KCOM 1350 (= ChDC B183)     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 188872..199195
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RN80_RS01055 (RN80_01065) rnpA 189000..189371 (-) 372 WP_060627209.1 ribonuclease P protein component -
  RN80_RS01060 (RN80_01070) - 189521..190711 (-) 1191 WP_060627210.1 acetate kinase -
  RN80_RS01065 (RN80_01075) comYH 190761..191714 (-) 954 WP_049515760.1 class I SAM-dependent methyltransferase Machinery gene
  RN80_RS01070 (RN80_01080) - 191775..192362 (-) 588 WP_060627211.1 class I SAM-dependent methyltransferase -
  RN80_RS01075 (RN80_01085) comGG/cglG 192395..192808 (-) 414 WP_060627212.1 competence type IV pilus minor pilin ComGG Machinery gene
  RN80_RS01080 (RN80_01090) comGF/cglF 192786..193247 (-) 462 WP_060627213.1 competence type IV pilus minor pilin ComGF Machinery gene
  RN80_RS01085 (RN80_01095) comGE/cglE 193210..193512 (-) 303 WP_253275437.1 competence type IV pilus minor pilin ComGE Machinery gene
  RN80_RS01090 (RN80_01100) comGD/cglD 193475..193909 (-) 435 WP_060627215.1 competence type IV pilus minor pilin ComGD Machinery gene
  RN80_RS01095 (RN80_01105) comGC/cglC 193872..194195 (-) 324 WP_060627216.1 competence type IV pilus major pilin ComGC Machinery gene
  RN80_RS01100 (RN80_01110) comGB/cglB 194197..195213 (-) 1017 WP_080998467.1 competence type IV pilus assembly protein ComGB Machinery gene
  RN80_RS01105 (RN80_01115) comGA/cglA/cilD 195161..196102 (-) 942 WP_060627217.1 competence type IV pilus ATPase ComGA Machinery gene
  RN80_RS01110 (RN80_01120) - 196179..196544 (-) 366 WP_000286405.1 DUF1033 family protein -
  RN80_RS01115 (RN80_01125) - 196694..197752 (-) 1059 WP_060627218.1 zinc-dependent alcohol dehydrogenase family protein -
  RN80_RS01120 (RN80_01130) nagA 197915..199066 (-) 1152 WP_001134549.1 N-acetylglucosamine-6-phosphate deacetylase -

Sequence

Protein


Download         Length: 107 a.a.        Molecular weight: 11943.06 Da        Isoelectric Point: 9.9097

>NTDB_id=155980 RN80_RS01095 WP_060627216.1 193872..194195(-) (comGC/cglC) [Streptococcus mitis strain KCOM 1350 (= ChDC B183)]
MKKIMTFLKKTKVKAFTLVEMLVVLLIISVLLLLFVPNLTKQKEAVNDKGKAAVVKVVESQAELYSLDKNEDASLSKLQA
DGRITEEQAKAYKEYHVKQGTSQSVSD

Nucleotide


Download         Length: 324 bp        

>NTDB_id=155980 RN80_RS01095 WP_060627216.1 193872..194195(-) (comGC/cglC) [Streptococcus mitis strain KCOM 1350 (= ChDC B183)]
ATGAAAAAAATTATGACATTCTTGAAAAAAACGAAAGTGAAGGCTTTCACGCTTGTGGAGATGTTGGTGGTCTTGCTCAT
CATCAGCGTGCTTCTATTACTCTTTGTACCTAATCTGACCAAGCAAAAAGAAGCAGTCAATGACAAAGGAAAAGCTGCTG
TTGTTAAGGTTGTGGAAAGCCAGGCAGAGCTTTATAGCTTGGATAAAAATGAAGATGCTAGCCTAAGCAAGTTACAAGCA
GATGGGAGAATCACAGAAGAGCAGGCTAAAGCTTATAAAGAATACCATGTTAAACAAGGTACCAGTCAAAGTGTTTCAGA
TTAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(12-34)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGC/cglC Streptococcus mitis NCTC 12261

94.393

100

0.944
  comGC/cglC Streptococcus mitis SK321

88.889

100

0.897
  comGC/cglC Streptococcus pneumoniae Rx1

87.963

100

0.888
  comGC/cglC Streptococcus pneumoniae D39

87.963

100

0.888
  comGC/cglC Streptococcus pneumoniae R6

87.963

100

0.888
  comGC/cglC Streptococcus pneumoniae TIGR4

87.037

100

0.879
  comYC Streptococcus gordonii str. Challis substr. CH1

67.619

98.131

0.664
  comYC Streptococcus mutans UA140

67.677

92.523

0.626
  comYC Streptococcus mutans UA159

67.677

92.523

0.626
  comYC Streptococcus suis isolate S10

67.045

82.243

0.551
  comGC Lactococcus lactis subsp. cremoris KW2

54.455

94.393

0.514
  comGC Staphylococcus aureus MW2

53.012

77.57

0.411
  comGC Staphylococcus aureus N315

53.012

77.57

0.411

Multiple sequence alignment