Detailed information    

insolico Bioinformatically predicted

Overview

Name   comYH   Type   Machinery gene
Locus tag   RN80_RS01065 Genome accession   NZ_CP012646
Coordinates   190761..191714 (-) Length   317 a.a.
NCBI ID   WP_049515760.1    Uniprot ID   -
Organism   Streptococcus mitis strain KCOM 1350 (= ChDC B183)     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 185761..196714
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RN80_RS01040 (RN80_01050) - 186520..187143 (-) 624 WP_060627206.1 hypothetical protein -
  RN80_RS01045 (RN80_01055) jag 187194..188183 (-) 990 WP_060627207.1 RNA-binding cell elongation regulator Jag/EloR -
  RN80_RS01050 (RN80_01060) - 188201..189025 (-) 825 WP_216596062.1 membrane protein insertase YidC -
  RN80_RS01055 (RN80_01065) rnpA 189000..189371 (-) 372 WP_060627209.1 ribonuclease P protein component -
  RN80_RS01060 (RN80_01070) - 189521..190711 (-) 1191 WP_060627210.1 acetate kinase -
  RN80_RS01065 (RN80_01075) comYH 190761..191714 (-) 954 WP_049515760.1 class I SAM-dependent methyltransferase Machinery gene
  RN80_RS01070 (RN80_01080) - 191775..192362 (-) 588 WP_060627211.1 class I SAM-dependent methyltransferase -
  RN80_RS01075 (RN80_01085) comGG/cglG 192395..192808 (-) 414 WP_060627212.1 competence type IV pilus minor pilin ComGG Machinery gene
  RN80_RS01080 (RN80_01090) comGF/cglF 192786..193247 (-) 462 WP_060627213.1 competence type IV pilus minor pilin ComGF Machinery gene
  RN80_RS01085 (RN80_01095) comGE/cglE 193210..193512 (-) 303 WP_253275437.1 competence type IV pilus minor pilin ComGE Machinery gene
  RN80_RS01090 (RN80_01100) comGD/cglD 193475..193909 (-) 435 WP_060627215.1 competence type IV pilus minor pilin ComGD Machinery gene
  RN80_RS01095 (RN80_01105) comGC/cglC 193872..194195 (-) 324 WP_060627216.1 competence type IV pilus major pilin ComGC Machinery gene
  RN80_RS01100 (RN80_01110) comGB/cglB 194197..195213 (-) 1017 WP_080998467.1 competence type IV pilus assembly protein ComGB Machinery gene
  RN80_RS01105 (RN80_01115) comGA/cglA/cilD 195161..196102 (-) 942 WP_060627217.1 competence type IV pilus ATPase ComGA Machinery gene
  RN80_RS01110 (RN80_01120) - 196179..196544 (-) 366 WP_000286405.1 DUF1033 family protein -

Sequence

Protein


Download         Length: 317 a.a.        Molecular weight: 35666.77 Da        Isoelectric Point: 4.2054

>NTDB_id=155975 RN80_RS01065 WP_049515760.1 190761..191714(-) (comYH) [Streptococcus mitis strain KCOM 1350 (= ChDC B183)]
MDFEKIEQAYTYLLENVQVIQSDLATNFYDALVEQNSIYLDGETELEQVKENNQALKRLALRKEEWLKTYQFLLMKAGQT
EPLQANHQFTPDAIALLLVFIVEELFKEEEITILEMGSGMGILGATFLTSLDKKVDYLGMEVDDLLIDLAASMADVIGLQ
AGFVQGDAVRPQMLKESDVVISDLPVGYYPDDAVASRHQVASSQENTYAHHLLMEQGLKYLKSDGYAIFLAPSDLLTSPQ
SDLLKGWLKEEASLTAMISLPENLFANAKQSKTIFILQKKNEITVDPFVYPLASLQDASVLMKFKENFQKWTQGTEI

Nucleotide


Download         Length: 954 bp        

>NTDB_id=155975 RN80_RS01065 WP_049515760.1 190761..191714(-) (comYH) [Streptococcus mitis strain KCOM 1350 (= ChDC B183)]
ATGGATTTTGAAAAAATTGAACAAGCTTATACGTATTTACTAGAGAATGTCCAAGTCATCCAAAGTGATTTGGCGACCAA
CTTTTATGACGCCTTGGTGGAGCAAAATAGCATCTATCTGGATGGTGAAACTGAGCTAGAGCAGGTCAAGGAAAACAATC
AGGCCCTTAAACGCTTAGCGCTACGCAAAGAAGAATGGCTCAAGACCTACCAGTTTCTCTTGATGAAGGCTGGGCAGACA
GAGCCCCTACAGGCCAATCACCAGTTTACACCAGATGCCATTGCTTTACTTTTGGTGTTTATTGTGGAAGAGTTGTTTAA
AGAAGAGGAGATTACGATCCTCGAAATGGGTTCTGGGATGGGAATTCTAGGCGCTACTTTCTTGACCTCGCTTGATAAAA
AGGTGGATTACTTGGGAATGGAAGTGGATGATTTGCTGATTGATTTGGCAGCAAGCATGGCAGATGTAATTGGTTTGCAG
GCTGGCTTTGTCCAAGGAGATGCTGTTCGTCCACAAATGCTCAAAGAAAGCGACGTGGTCATCAGCGACTTGCCTGTCGG
CTATTATCCTGATGATGCCGTTGCGTCGCGCCATCAAGTTGCTTCTAGTCAAGAAAATACCTACGCCCATCACTTGCTCA
TGGAACAAGGGCTTAAGTACCTCAAATCAGATGGCTACGCTATTTTTCTAGCTCCGAGTGATTTGTTGACCAGTCCTCAA
AGTGACTTGTTGAAAGGTTGGTTGAAAGAGGAGGCAAGTCTGACTGCCATGATTAGTTTGCCTGAAAATCTCTTTGCCAA
TGCCAAACAATCTAAGACCATTTTTATCCTACAGAAGAAAAATGAAATAACAGTAGATCCTTTTGTTTATCCTCTTGCTA
GCTTGCAAGATGCAAGTGTTTTAATGAAATTTAAAGAAAATTTTCAAAAATGGACTCAAGGTACTGAAATATAA

Domains

Predicted by InterproScan.

N-6 DNA Methylase (N6_Mtase)

(69-282)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comYH Streptococcus mutans UA140

54.313

98.738

0.536
  comYH Streptococcus mutans UA159

53.994

98.738

0.533

Multiple sequence alignment