Detailed information    

insolico Bioinformatically predicted

Overview


Name   comGG/cglG   Type   Machinery gene
Locus tag   RN80_RS01075 Genome accession   NZ_CP012646
Coordinates   192395..192808 (-) Length   137 a.a.
NCBI ID   WP_060627212.1    Uniprot ID   -
Organism   Streptococcus mitis strain KCOM 1350 (= ChDC B183)     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context


Location: 187395..197808
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RN80_RS01050 (RN80_01060) - 188201..189025 (-) 825 WP_216596062.1 membrane protein insertase YidC -
  RN80_RS01055 (RN80_01065) rnpA 189000..189371 (-) 372 WP_060627209.1 ribonuclease P protein component -
  RN80_RS01060 (RN80_01070) - 189521..190711 (-) 1191 WP_060627210.1 acetate kinase -
  RN80_RS01065 (RN80_01075) comYH 190761..191714 (-) 954 WP_049515760.1 class I SAM-dependent methyltransferase Machinery gene
  RN80_RS01070 (RN80_01080) - 191775..192362 (-) 588 WP_060627211.1 class I SAM-dependent methyltransferase -
  RN80_RS01075 (RN80_01085) comGG/cglG 192395..192808 (-) 414 WP_060627212.1 competence type IV pilus minor pilin ComGG Machinery gene
  RN80_RS01080 (RN80_01090) comGF/cglF 192786..193247 (-) 462 WP_060627213.1 competence type IV pilus minor pilin ComGF Machinery gene
  RN80_RS01085 (RN80_01095) comGE/cglE 193210..193512 (-) 303 WP_253275437.1 competence type IV pilus minor pilin ComGE Machinery gene
  RN80_RS01090 (RN80_01100) comGD/cglD 193475..193909 (-) 435 WP_060627215.1 competence type IV pilus minor pilin ComGD Machinery gene
  RN80_RS01095 (RN80_01105) comGC/cglC 193872..194195 (-) 324 WP_060627216.1 competence type IV pilus major pilin ComGC Machinery gene
  RN80_RS01100 (RN80_01110) comGB/cglB 194197..195213 (-) 1017 WP_080998467.1 competence type IV pilus assembly protein ComGB Machinery gene
  RN80_RS01105 (RN80_01115) comGA/cglA/cilD 195161..196102 (-) 942 WP_060627217.1 competence type IV pilus ATPase ComGA Machinery gene
  RN80_RS01110 (RN80_01120) - 196179..196544 (-) 366 WP_000286405.1 DUF1033 family protein -
  RN80_RS01115 (RN80_01125) - 196694..197752 (-) 1059 WP_060627218.1 zinc-dependent alcohol dehydrogenase family protein -

Sequence


Protein


Download         Length: 137 a.a.        Molecular weight: 15849.22 Da        Isoelectric Point: 10.2021

>NTDB_id=155976 RN80_RS01075 WP_060627212.1 192395..192808(-) (comGG/cglG) [Streptococcus mitis strain KCOM 1350 (= ChDC B183)]
MWKKQKVKAGVLIYAVTMAAIFSLLLQFYLNRQVAHYQDYSLNKEKLIAFAMANRTKDKVEQESGEQAFNLGQVSYQNKK
TSLVTTVRTPKSQYEFIFPSVKIKEEKTDKKEKVVTDSSNQAEKKKSEEKVEKKENS

Nucleotide


Download         Length: 414 bp        

>NTDB_id=155976 RN80_RS01075 WP_060627212.1 192395..192808(-) (comGG/cglG) [Streptococcus mitis strain KCOM 1350 (= ChDC B183)]
GTGTGGAAAAAGCAAAAAGTTAAGGCGGGTGTTCTCATCTATGCAGTCACTATGGCAGCCATCTTTAGTCTTTTGTTACA
ATTTTACTTGAACAGACAAGTCGCCCACTATCAAGACTATTCTTTGAATAAAGAAAAGCTGATTGCTTTTGCTATGGCCA
ATCGAACCAAAGATAAGGTTGAGCAAGAAAGTGGGGAACAGGCCTTTAATCTGGGTCAAGTGAGTTATCAAAATAAGAAA
ACAAGCTTGGTGACGACGGTTCGTACGCCTAAGAGTCAATATGAGTTCATCTTTCCTTCCGTCAAAATCAAAGAAGAGAA
AACAGATAAAAAGGAAAAGGTAGTGACTGATTCAAGTAATCAAGCAGAGAAGAAAAAATCAGAAGAGAAAGTTGAAAAGA
AAGAGAATTCCTAG

Domains



No domain identified.



Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGG/cglG Streptococcus mitis NCTC 12261

97.059

99.27

0.964

  comGG/cglG Streptococcus mitis SK321

94.891

100

0.949

  comGG/cglG Streptococcus pneumoniae Rx1

88.034

85.401

0.752

  comGG/cglG Streptococcus pneumoniae D39

88.034

85.401

0.752

  comGG/cglG Streptococcus pneumoniae R6

88.034

85.401

0.752

  comGG/cglG Streptococcus pneumoniae TIGR4

88.034

85.401

0.752


Multiple sequence alignment