Detailed information NTG0155977

Bioinformatically predicted

Overview

• Name: comGF/cglF
• Type: Machinery gene
• Locus tag: RN80_RS01080
• Genome accession: NZ_CP012646
• Coordinates: 192786..193247 (-)
• Length: 153 a.a.
• NCBI ID: WP_060627213.1
• Uniprot ID: -
• Organism: Streptococcus mitis strain KCOM 1350 (= ChDC B183)
• Function: dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 187786..198247

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
RN80_RS01050 (RN80_01060)	-	188201..189025 (-)	825	WP_216596062.1	membrane protein insertase YidC	-
RN80_RS01055 (RN80_01065)	rnpA	189000..189371 (-)	372	WP_060627209.1	ribonuclease P protein component	-
RN80_RS01060 (RN80_01070)	-	189521..190711 (-)	1191	WP_060627210.1	acetate kinase	-
RN80_RS01065 (RN80_01075)	comYH	190761..191714 (-)	954	WP_049515760.1	class I SAM-dependent methyltransferase	Machinery gene
RN80_RS01070 (RN80_01080)	-	191775..192362 (-)	588	WP_060627211.1	class I SAM-dependent methyltransferase	-
RN80_RS01075 (RN80_01085)	comGG/cglG	192395..192808 (-)	414	WP_060627212.1	competence type IV pilus minor pilin ComGG	Machinery gene
RN80_RS01080 (RN80_01090)	comGF/cglF	192786..193247 (-)	462	WP_060627213.1	competence type IV pilus minor pilin ComGF	Machinery gene
RN80_RS01085 (RN80_01095)	comGE/cglE	193210..193512 (-)	303	WP_253275437.1	competence type IV pilus minor pilin ComGE	Machinery gene
RN80_RS01090 (RN80_01100)	comGD/cglD	193475..193909 (-)	435	WP_060627215.1	competence type IV pilus minor pilin ComGD	Machinery gene
RN80_RS01095 (RN80_01105)	comGC/cglC	193872..194195 (-)	324	WP_060627216.1	competence type IV pilus major pilin ComGC	Machinery gene
RN80_RS01100 (RN80_01110)	comGB/cglB	194197..195213 (-)	1017	WP_080998467.1	competence type IV pilus assembly protein ComGB	Machinery gene
RN80_RS01105 (RN80_01115)	comGA/cglA/cilD	195161..196102 (-)	942	WP_060627217.1	competence type IV pilus ATPase ComGA	Machinery gene
RN80_RS01110 (RN80_01120)	-	196179..196544 (-)	366	WP_000286405.1	DUF1033 family protein	-
RN80_RS01115 (RN80_01125)	-	196694..197752 (-)	1059	WP_060627218.1	zinc-dependent alcohol dehydrogenase family protein	-

Sequence

Protein

• Length: 153 a.a.
• Molecular weight: 17772.46 Da
• Isoelectric Point: 9.3126

>NTDB_id=155977 RN80_RS01080 WP_060627213.1 192786..193247(-) (comGF/cglF) [Streptococcus mitis strain KCOM 1350 (= ChDC B183)]
MAQNSCWLSKSIKIKAFTLLESLIALIVISGSLLLFQAMSQLLISEVRYQQQSEQKEWLLFVDQLEAELDRSQFEKVEGN
RIYMKQDGKEIAIGKSKSDDFRKTDASGRGYQPMIYGLKSAQITEDNQVVRFRFQFQKGLEREFIYRVEKAKS

Nucleotide

• Length: 462 bp

>NTDB_id=155977 RN80_RS01080 WP_060627213.1 192786..193247(-) (comGF/cglF) [Streptococcus mitis strain KCOM 1350 (= ChDC B183)]
ATGGCTCAGAACAGTTGTTGGCTATCAAAGAGCATTAAAATCAAGGCTTTTACCCTGTTAGAATCCCTGATTGCTCTTAT
TGTTATCAGTGGGAGTTTACTTCTCTTTCAAGCCATGAGTCAGCTCCTTATTTCAGAAGTTCGATACCAGCAACAAAGCG
AGCAAAAGGAGTGGCTCCTGTTTGTGGACCAGTTGGAGGCAGAATTAGACCGTTCGCAGTTCGAAAAAGTAGAAGGTAAT
CGCATTTATATGAAGCAGGATGGCAAGGAAATTGCGATAGGTAAGTCTAAATCAGATGATTTTCGGAAAACCGATGCCAG
TGGACGAGGATATCAGCCTATGATTTATGGACTCAAATCTGCACAGATTACAGAGGACAATCAAGTGGTTCGCTTTCGTT
TTCAATTCCAAAAAGGCTTAGAAAGGGAGTTCATCTATCGTGTGGAAAAAGCAAAAAGTTAA

Domains

Predicted by InterproScan.

• Putative Competence protein ComGF (ComGF) (45-141)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comGF/cglF	Streptococcus mitis NCTC 12261	96.732	100	0.967
comGF/cglF	Streptococcus mitis SK321	94.118	100	0.941
comGF/cglF	Streptococcus pneumoniae Rx1	88.889	100	0.889
comGF/cglF	Streptococcus pneumoniae D39	88.889	100	0.889
comGF/cglF	Streptococcus pneumoniae R6	88.889	100	0.889
comGF/cglF	Streptococcus pneumoniae TIGR4	88.889	100	0.889