Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilE   Type   Machinery gene
Locus tag   AMQ28_RS09785 Genome accession   NZ_CP012608
Coordinates   2067243..2067680 (+) Length   145 a.a.
NCBI ID   WP_053579430.1    Uniprot ID   A0A0M5JJQ0
Organism   Acinetobacter sp. TTH0-4     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2062243..2072680
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AMQ28_RS09765 (AMQ28_09770) - 2063765..2064655 (+) 891 WP_053579426.1 metal-dependent hydrolase -
  AMQ28_RS09770 (AMQ28_09775) - 2064801..2065391 (+) 591 WP_053579427.1 LemA family protein -
  AMQ28_RS09775 (AMQ28_09780) - 2065420..2066493 (+) 1074 WP_053579428.1 TPM domain-containing protein -
  AMQ28_RS09780 (AMQ28_09785) - 2066487..2067047 (+) 561 WP_053579429.1 TPM domain-containing protein -
  AMQ28_RS09785 (AMQ28_09790) pilE 2067243..2067680 (+) 438 WP_053579430.1 pilin Machinery gene
  AMQ28_RS09790 (AMQ28_09795) - 2067802..2069115 (+) 1314 WP_171250321.1 sulfatase-like hydrolase/transferase -
  AMQ28_RS09795 (AMQ28_09800) - 2069087..2070328 (+) 1242 WP_053579432.1 O-antigen ligase family protein -
  AMQ28_RS09800 (AMQ28_09805) - 2070416..2072062 (+) 1647 WP_053579433.1 PglL family O-oligosaccharyltransferase -
  AMQ28_RS09805 (AMQ28_09810) bfr 2072129..2072593 (-) 465 WP_053579434.1 heteropolymeric bacterioferritin subunit Bfr -

Sequence

Protein


Download         Length: 145 a.a.        Molecular weight: 14535.72 Da        Isoelectric Point: 7.5873

>NTDB_id=155769 AMQ28_RS09785 WP_053579430.1 2067243..2067680(+) (pilE) [Acinetobacter sp. TTH0-4]
MNAQKGFTLIELMIVVAIIGILAAIAIPAYQDYIARSQMSEAMTLASGLKGSVSETFSQDGSCPVNGSAGIAAASTIKGK
YVASVATGGTTPACTIVATMAASGVSTGIQSTTLTLTMTNRGGSLDWACTSSAAQKYVPKACDGV

Nucleotide


Download         Length: 438 bp        

>NTDB_id=155769 AMQ28_RS09785 WP_053579430.1 2067243..2067680(+) (pilE) [Acinetobacter sp. TTH0-4]
ATGAATGCTCAAAAAGGTTTTACTCTTATTGAATTAATGATCGTTGTAGCGATTATCGGTATTTTGGCTGCAATTGCGAT
TCCGGCTTACCAAGACTATATTGCACGCTCGCAAATGTCAGAAGCAATGACGTTGGCTTCAGGCTTGAAAGGTTCTGTGT
CTGAAACTTTTAGTCAAGATGGAAGCTGTCCAGTAAATGGCAGTGCTGGTATTGCAGCAGCTTCAACCATCAAAGGTAAA
TATGTAGCTTCAGTTGCTACAGGTGGTACTACTCCAGCCTGTACGATTGTAGCAACAATGGCGGCAAGTGGTGTTTCAAC
TGGGATTCAGAGTACTACTTTGACTTTAACAATGACAAACCGTGGTGGTTCATTGGACTGGGCATGTACTTCTAGCGCTG
CACAAAAATATGTTCCAAAAGCTTGTGACGGCGTATAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(1-26)

Pilin (bacterial filament) (Pilin)

(35-142)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0M5JJQ0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilE Neisseria gonorrhoeae MS11

48.63

100

0.49
  pilA Acinetobacter nosocomialis M2

56.557

84.138

0.476
  comP Acinetobacter baylyi ADP1

44.737

100

0.469
  pilE Neisseria gonorrhoeae strain FA1090

53.543

87.586

0.469
  pilE Neisseria elongata subsp. glycolytica ATCC 29315

41.875

100

0.462
  pilA2 Legionella pneumophila str. Paris

46.479

97.931

0.455
  pilA2 Legionella pneumophila strain ERS1305867

45.775

97.931

0.448
  pilA Ralstonia pseudosolanacearum GMI1000

38.994

100

0.428
  pilA Acinetobacter baumannii strain A118

41.892

100

0.428
  pilA Pseudomonas aeruginosa PAK

39.474

100

0.414
  pilA/pilA1 Eikenella corrodens VA1

39.735

100

0.414
  pilA Vibrio cholerae O1 biovar El Tor strain E7946

39.073

100

0.407
  pilA Vibrio cholerae strain A1552

39.073

100

0.407
  pilA Vibrio cholerae C6706

39.073

100

0.407
  pilA/pilAI Pseudomonas stutzeri DSM 10701

38.462

98.621

0.379
  pilA/pilAII Pseudomonas stutzeri DSM 10701

37.762

98.621

0.372

Multiple sequence alignment