Detailed information
Bioinformatically predicted
Overview
| Name | pilT | Type | Machinery gene |
| Locus tag | LC55x_RS05745 | Genome accession | NZ_CP011130 |
| Coordinates | 1474173..1475210 (+) | Length | 345 a.a. |
| NCBI ID | WP_036109068.1 | Uniprot ID | A0A108U802 |
| Organism | Lysobacter capsici strain 55 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1469173..1480210
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LC55x_RS05720 (LC55x_1290) | - | 1469931..1470950 (+) | 1020 | WP_057920927.1 | lipase secretion chaperone | - |
| LC55x_RS05725 (LC55x_1291) | - | 1471152..1471625 (-) | 474 | WP_082648353.1 | DUF4426 domain-containing protein | - |
| LC55x_RS05730 (LC55x_1292) | proC | 1471622..1472458 (-) | 837 | WP_057920929.1 | pyrroline-5-carboxylate reductase | - |
| LC55x_RS27685 (LC55x_1293) | - | 1472794..1473192 (+) | 399 | WP_187313345.1 | hypothetical protein | - |
| LC55x_RS05740 (LC55x_1294) | - | 1473296..1473982 (-) | 687 | WP_257720862.1 | YggS family pyridoxal phosphate-dependent enzyme | - |
| LC55x_RS05745 (LC55x_1295) | pilT | 1474173..1475210 (+) | 1038 | WP_036109068.1 | type IV pilus twitching motility protein PilT | Machinery gene |
| LC55x_RS05750 (LC55x_1296) | pilU | 1475316..1476482 (+) | 1167 | WP_046655750.1 | PilT/PilU family type 4a pilus ATPase | Machinery gene |
Sequence
Protein
Download Length: 345 a.a. Molecular weight: 38546.39 Da Isoelectric Point: 6.7270
>NTDB_id=142609 LC55x_RS05745 WP_036109068.1 1474173..1475210(+) (pilT) [Lysobacter capsici strain 55]
MDIAELLAFSVKNKASDLHLSAGLPPMIRVDGDVRRINIPALDHKQVHALVYDIMSDKQRRDFEEFLEVDFSFEIPGLAR
FRVNAFNQNRGAGAVFRTIPSEVLTLEDLGCPPIFRQLIEQPQGLILVTGPTGSGKSTTLAAMIDHINKNEYAHILSVED
PIEFVHTSQKCLINQREIHRDTHGFNEALRSALREDPDYILVGELRDLETIRLALTAAETGHLVFGTLHTSSAAKTVDRI
IDVFPAGEKPMVRSMLSESLRAVISQALLKKVGGGRTAAWEIMVGIPAIRNLIREDKVAQMYSAIQTGQGYGMMTLDQHL
QDLVKRGMILRPQAREYAKDKRLFD
MDIAELLAFSVKNKASDLHLSAGLPPMIRVDGDVRRINIPALDHKQVHALVYDIMSDKQRRDFEEFLEVDFSFEIPGLAR
FRVNAFNQNRGAGAVFRTIPSEVLTLEDLGCPPIFRQLIEQPQGLILVTGPTGSGKSTTLAAMIDHINKNEYAHILSVED
PIEFVHTSQKCLINQREIHRDTHGFNEALRSALREDPDYILVGELRDLETIRLALTAAETGHLVFGTLHTSSAAKTVDRI
IDVFPAGEKPMVRSMLSESLRAVISQALLKKVGGGRTAAWEIMVGIPAIRNLIREDKVAQMYSAIQTGQGYGMMTLDQHL
QDLVKRGMILRPQAREYAKDKRLFD
Nucleotide
Download Length: 1038 bp
>NTDB_id=142609 LC55x_RS05745 WP_036109068.1 1474173..1475210(+) (pilT) [Lysobacter capsici strain 55]
ATGGATATCGCCGAACTACTGGCGTTCTCGGTTAAGAACAAAGCATCCGACTTGCATCTGTCCGCGGGCCTGCCGCCGAT
GATCCGGGTCGATGGCGACGTGCGCCGGATCAACATCCCGGCCCTGGACCACAAACAGGTCCATGCGCTGGTCTACGACA
TCATGTCGGACAAGCAGCGGCGCGACTTCGAAGAATTCCTCGAGGTCGACTTCTCCTTCGAAATCCCCGGCCTGGCGCGC
TTCCGCGTCAACGCCTTCAACCAGAACCGCGGCGCCGGCGCGGTGTTCCGTACCATTCCCTCCGAAGTGCTGACCCTGGA
AGACCTCGGCTGCCCGCCGATCTTCCGTCAGCTCATCGAACAGCCGCAGGGCCTGATCCTGGTGACCGGGCCGACCGGCT
CGGGCAAGTCGACCACGCTCGCGGCGATGATCGACCACATCAACAAGAACGAGTACGCGCACATCCTGTCGGTGGAAGAC
CCGATCGAGTTCGTGCACACCTCGCAGAAGTGCCTGATCAACCAGCGCGAAATCCATCGCGATACGCACGGGTTCAACGA
GGCCCTGCGCTCGGCGTTGCGCGAAGACCCCGACTATATCCTGGTCGGCGAGTTGCGCGACCTGGAAACCATCCGCCTGG
CGCTGACCGCGGCGGAAACCGGCCACTTGGTGTTCGGCACCCTGCATACCTCGTCGGCGGCCAAGACCGTCGACCGCATC
ATCGACGTGTTCCCCGCCGGCGAAAAGCCGATGGTGCGCTCGATGCTGTCGGAATCGCTGCGCGCGGTGATTTCGCAGGC
GCTGCTCAAGAAGGTCGGCGGCGGCCGTACCGCGGCCTGGGAAATCATGGTCGGCATCCCGGCGATCCGAAACCTCATCC
GCGAGGACAAGGTCGCGCAGATGTATTCGGCGATCCAGACCGGCCAGGGCTACGGCATGATGACGCTCGATCAGCATCTG
CAGGACCTGGTCAAGCGCGGCATGATCCTGCGCCCGCAGGCGCGCGAGTACGCGAAGGACAAGCGCCTGTTCGACTGA
ATGGATATCGCCGAACTACTGGCGTTCTCGGTTAAGAACAAAGCATCCGACTTGCATCTGTCCGCGGGCCTGCCGCCGAT
GATCCGGGTCGATGGCGACGTGCGCCGGATCAACATCCCGGCCCTGGACCACAAACAGGTCCATGCGCTGGTCTACGACA
TCATGTCGGACAAGCAGCGGCGCGACTTCGAAGAATTCCTCGAGGTCGACTTCTCCTTCGAAATCCCCGGCCTGGCGCGC
TTCCGCGTCAACGCCTTCAACCAGAACCGCGGCGCCGGCGCGGTGTTCCGTACCATTCCCTCCGAAGTGCTGACCCTGGA
AGACCTCGGCTGCCCGCCGATCTTCCGTCAGCTCATCGAACAGCCGCAGGGCCTGATCCTGGTGACCGGGCCGACCGGCT
CGGGCAAGTCGACCACGCTCGCGGCGATGATCGACCACATCAACAAGAACGAGTACGCGCACATCCTGTCGGTGGAAGAC
CCGATCGAGTTCGTGCACACCTCGCAGAAGTGCCTGATCAACCAGCGCGAAATCCATCGCGATACGCACGGGTTCAACGA
GGCCCTGCGCTCGGCGTTGCGCGAAGACCCCGACTATATCCTGGTCGGCGAGTTGCGCGACCTGGAAACCATCCGCCTGG
CGCTGACCGCGGCGGAAACCGGCCACTTGGTGTTCGGCACCCTGCATACCTCGTCGGCGGCCAAGACCGTCGACCGCATC
ATCGACGTGTTCCCCGCCGGCGAAAAGCCGATGGTGCGCTCGATGCTGTCGGAATCGCTGCGCGCGGTGATTTCGCAGGC
GCTGCTCAAGAAGGTCGGCGGCGGCCGTACCGCGGCCTGGGAAATCATGGTCGGCATCCCGGCGATCCGAAACCTCATCC
GCGAGGACAAGGTCGCGCAGATGTATTCGGCGATCCAGACCGGCCAGGGCTACGGCATGATGACGCTCGATCAGCATCTG
CAGGACCTGGTCAAGCGCGGCATGATCCTGCGCCCGCAGGCGCGCGAGTACGCGAAGGACAAGCGCCTGTTCGACTGA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilT | Acinetobacter nosocomialis M2 |
79.07 |
99.71 |
0.788 |
| pilT | Acinetobacter baumannii D1279779 |
79.07 |
99.71 |
0.788 |
| pilT | Acinetobacter baumannii strain A118 |
79.07 |
99.71 |
0.788 |
| pilT | Acinetobacter baylyi ADP1 |
77.616 |
99.71 |
0.774 |
| pilT | Pseudomonas stutzeri DSM 10701 |
77.616 |
99.71 |
0.774 |
| pilT | Pseudomonas aeruginosa PAK |
77.876 |
98.261 |
0.765 |
| pilT | Legionella pneumophila strain Lp02 |
73.256 |
99.71 |
0.73 |
| pilT | Legionella pneumophila strain ERS1305867 |
73.256 |
99.71 |
0.73 |
| pilT | Vibrio cholerae O1 biovar El Tor strain E7946 |
69.605 |
95.362 |
0.664 |
| pilT | Vibrio cholerae strain A1552 |
69.605 |
95.362 |
0.664 |
| pilT | Neisseria meningitidis 8013 |
65.789 |
99.13 |
0.652 |
| pilT | Neisseria gonorrhoeae MS11 |
65.497 |
99.13 |
0.649 |
| pilT | Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539 |
48.986 |
100 |
0.49 |
| pilU | Pseudomonas stutzeri DSM 10701 |
40.413 |
98.261 |
0.397 |
| pilU | Acinetobacter baylyi ADP1 |
39.412 |
98.551 |
0.388 |
| pilU | Vibrio cholerae strain A1552 |
40.308 |
94.203 |
0.38 |