Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   VN11_RS17180 Genome accession   NZ_CP011010
Coordinates   3763913..3764329 (-) Length   138 a.a.
NCBI ID   WP_053450612.1    Uniprot ID   -
Organism   Stenotrophomonas maltophilia strain ISMMS3 isolate Patient     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3758913..3769329
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VN11_RS17170 (VN11_17195) pilB 3759901..3761631 (-) 1731 WP_053450610.1 type IV-A pilus assembly ATPase PilB Machinery gene
  VN11_RS17175 (VN11_17200) - 3761696..3763810 (-) 2115 WP_053450611.1 sulfatase-like hydrolase/transferase -
  VN11_RS17180 (VN11_17205) pilA 3763913..3764329 (-) 417 WP_053450612.1 pilin Machinery gene
  VN11_RS17185 (VN11_17210) pilC 3764685..3765944 (+) 1260 WP_053450613.1 type II secretion system F family protein Machinery gene
  VN11_RS17190 (VN11_17215) - 3765952..3766815 (+) 864 WP_008268831.1 A24 family peptidase -
  VN11_RS17195 (VN11_17220) coaE 3766827..3767438 (+) 612 WP_053450614.1 dephospho-CoA kinase -
  VN11_RS17200 (VN11_17225) - 3767757..3768215 (+) 459 WP_053450615.1 pentapeptide repeat-containing protein -
  VN11_RS17205 (VN11_17230) - 3768423..3768809 (-) 387 WP_053450616.1 hypothetical protein -

Sequence

Protein


Download         Length: 138 a.a.        Molecular weight: 14085.16 Da        Isoelectric Point: 8.1063

>NTDB_id=141424 VN11_RS17180 WP_053450612.1 3763913..3764329(-) (pilA) [Stenotrophomonas maltophilia strain ISMMS3 isolate Patient]
MKNQKGFTLIELMIVVAIIAILAAIALPAYQDYTVRSRVSEGAVLASGAKATVGENIANAGGTIDDTACNGVATFTTATK
NTAKLECASGVITVTGTAAAKNVALQFEPKSASAGITWTCTSTADNKYLPAECRKAAP

Nucleotide


Download         Length: 417 bp        

>NTDB_id=141424 VN11_RS17180 WP_053450612.1 3763913..3764329(-) (pilA) [Stenotrophomonas maltophilia strain ISMMS3 isolate Patient]
ATGAAGAACCAGAAGGGCTTCACCCTTATCGAACTGATGATCGTCGTCGCGATCATCGCCATCCTGGCCGCCATCGCTCT
GCCGGCTTACCAGGACTACACCGTCCGTTCGCGCGTCTCGGAAGGCGCCGTGCTGGCTTCGGGTGCCAAGGCCACCGTCG
GTGAGAACATCGCCAACGCCGGCGGCACGATCGATGACACCGCCTGCAATGGCGTTGCCACCTTCACCACCGCGACCAAG
AACACCGCGAAGCTGGAATGTGCCAGTGGCGTCATCACTGTGACCGGCACCGCAGCCGCCAAGAATGTCGCGCTGCAGTT
CGAGCCGAAGTCGGCCAGCGCCGGCATCACCTGGACCTGCACCTCGACCGCTGACAACAAGTACCTGCCGGCCGAGTGCC
GCAAGGCTGCTCCGTAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(1-27)

Pilin (bacterial filament) (Pilin)

(35-134)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Ralstonia pseudosolanacearum GMI1000

47.561

100

0.565
  comP Acinetobacter baylyi ADP1

51.37

100

0.543
  pilA2 Legionella pneumophila str. Paris

51.852

97.826

0.507
  pilA2 Legionella pneumophila strain ERS1305867

51.111

97.826

0.5
  pilE Neisseria gonorrhoeae strain FA1090

42.208

100

0.471
  pilA/pilAI Pseudomonas stutzeri DSM 10701

46.377

100

0.464
  pilA/pilA1 Eikenella corrodens VA1

41.722

100

0.457
  pilE Neisseria gonorrhoeae MS11

37.975

100

0.435
  pilA Acinetobacter baumannii strain A118

40.268

100

0.435
  pilA Pseudomonas aeruginosa PAK

39.333

100

0.428
  pilA Glaesserella parasuis strain SC1401

40.559

100

0.42
  pilA Haemophilus influenzae Rd KW20

42.222

97.826

0.413
  pilA Haemophilus influenzae 86-028NP

40.909

95.652

0.391
  pilA/pilAII Pseudomonas stutzeri DSM 10701

37.778

97.826

0.37

Multiple sequence alignment