Detailed information NTG0141423

Bioinformatically predicted

Overview

• Name: pilB
• Type: Machinery gene
• Locus tag: VN11_RS17170
• Genome accession: NZ_CP011010
• Coordinates: 3759901..3761631 (-)
• Length: 576 a.a.
• NCBI ID: WP_053450610.1
• Uniprot ID: -
• Organism: Stenotrophomonas maltophilia strain ISMMS3 isolate Patient
• Function: power the assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 3754901..3766631

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
VN11_RS17155 (VN11_17180)	sucC	3755171..3756340 (-)	1170	WP_004154430.1	ADP-forming succinate--CoA ligase subunit beta	-
VN11_RS17160 (VN11_17185)	-	3756746..3758359 (+)	1614	WP_053450609.1	ATP-binding protein	-
VN11_RS17165 (VN11_17190)	pilR	3758420..3759793 (+)	1374	WP_008265059.1	sigma-54 dependent transcriptional regulator	Regulator
VN11_RS17170 (VN11_17195)	pilB	3759901..3761631 (-)	1731	WP_053450610.1	type IV-A pilus assembly ATPase PilB	Machinery gene
VN11_RS17175 (VN11_17200)	-	3761696..3763810 (-)	2115	WP_053450611.1	sulfatase-like hydrolase/transferase	-
VN11_RS17180 (VN11_17205)	pilA	3763913..3764329 (-)	417	WP_053450612.1	pilin	Machinery gene
VN11_RS17185 (VN11_17210)	pilC	3764685..3765944 (+)	1260	WP_053450613.1	type II secretion system F family protein	Machinery gene

Sequence

Protein

• Length: 576 a.a.
• Molecular weight: 62258.19 Da
• Isoelectric Point: 6.0426

>NTDB_id=141423 VN11_RS17170 WP_053450610.1 3759901..3761631(-) (pilB) [Stenotrophomonas maltophilia strain ISMMS3 isolate Patient]
MNTATTANLVGITGLARRLVQDGALDEAGARDAMAKAAAARQPLPTWFAQNRVVGAAQLAAANAVEFGMPLFDVSTFDAN
QNAMSLVSEELLRKHNVLPLFKRGGKLFVGTSNPTHSLDEIKFHTNLVVEPILVDEDQIRRTLEQWHASHDTLGDALGGD
DEGMGNLEVSAGDEDLGTGGDSGIDAKGDDTPVVKFVNKVLVDAIRKGASDIHFEPYEDDYRVRLRIDGLLKMVARAPVK
LNQRIAARLKVMAQLDIAEKRVPQDGRIKLNLSKTKQIDFRVSTLPTLFGEKVVLRILDGSAAKLGIDKLGYEPDQQKLF
QDAIHKPYGMVLVTGPTGSGKTVSLYTALGILNDETRNISTAEDPVEIRLPGVNQVQQNNKRGMTFAAALRSFLRQDPDI
IMVGEIRDLETAEIAIKAAQTGHMVLSTLHTNDAPQTIARLMNMGIAPYNITSSVTLVIAQRLARRLCGNCKRLATLPEH
ALLAEGFTQAQLDAGIQLYEAVGCDECTEGYKGRTGIYQVMPMTDEIATIVLAGGNALQIAEAAQQIGVNDLRQSALKKA
AAGITSLAEINRVTKD

Nucleotide

• Length: 1731 bp

>NTDB_id=141423 VN11_RS17170 WP_053450610.1 3759901..3761631(-) (pilB) [Stenotrophomonas maltophilia strain ISMMS3 isolate Patient]
ATGAACACCGCTACCACCGCCAACCTCGTCGGCATCACCGGCCTGGCCCGCCGCCTGGTCCAGGACGGCGCCCTGGATGA
AGCGGGCGCACGCGATGCGATGGCCAAGGCTGCTGCCGCACGCCAGCCCCTGCCGACCTGGTTCGCCCAGAACAGGGTGG
TCGGTGCCGCGCAGCTGGCCGCGGCCAACGCGGTCGAGTTCGGCATGCCGCTGTTCGATGTCTCCACCTTCGACGCCAAC
CAGAACGCGATGAGCCTGGTCAGCGAGGAACTGCTGCGCAAGCACAACGTGCTGCCGCTGTTCAAACGTGGGGGCAAGCT
GTTCGTCGGTACCAGCAACCCGACCCACTCGCTGGATGAGATCAAGTTCCACACCAATCTGGTGGTGGAACCGATCCTGG
TGGATGAAGACCAGATCCGCCGTACGCTGGAGCAGTGGCACGCCAGCCACGACACGCTCGGTGACGCGCTGGGTGGTGAC
GACGAAGGCATGGGCAATCTGGAGGTCTCCGCCGGTGACGAGGACCTGGGCACCGGAGGTGATTCCGGCATCGATGCCAA
GGGCGACGACACCCCGGTGGTGAAGTTCGTCAACAAGGTGCTGGTCGATGCCATCCGCAAGGGCGCCTCGGACATCCACT
TCGAGCCCTATGAAGACGACTACCGGGTGCGCCTGCGCATCGACGGGTTGCTGAAGATGGTGGCGCGCGCGCCGGTGAAG
CTCAATCAGCGCATCGCCGCGCGCCTGAAGGTGATGGCGCAGCTGGACATCGCCGAGAAGCGCGTGCCGCAGGACGGGCG
CATCAAGCTCAACCTGTCCAAGACCAAGCAGATCGACTTCCGCGTGAGCACGCTGCCGACCCTGTTCGGCGAGAAGGTGG
TGCTGCGTATCCTGGATGGCAGTGCGGCCAAGCTGGGCATCGACAAGCTGGGCTACGAGCCGGACCAGCAGAAGCTGTTC
CAGGATGCCATCCACAAGCCCTACGGCATGGTGCTGGTGACCGGCCCGACCGGTTCGGGCAAGACCGTGTCGCTGTATAC
GGCGCTGGGCATCCTCAACGACGAGACGCGCAACATCTCCACCGCCGAAGACCCGGTGGAAATCCGCCTGCCCGGCGTCA
ACCAGGTGCAGCAGAACAACAAGCGCGGCATGACCTTCGCCGCTGCGCTGCGCTCGTTCCTGCGCCAGGACCCGGACATC
ATCATGGTCGGCGAAATCCGCGACCTGGAAACGGCGGAGATCGCGATCAAGGCGGCGCAGACCGGCCACATGGTGCTGTC
CACGCTGCATACCAACGATGCGCCGCAGACCATCGCGCGCCTGATGAACATGGGCATCGCGCCGTACAACATCACCAGCT
CGGTGACGCTGGTGATCGCCCAGCGCCTGGCGCGCCGCCTGTGTGGCAACTGCAAGCGCCTGGCCACGCTGCCCGAACAT
GCGCTGCTGGCCGAGGGCTTCACCCAGGCGCAGCTGGACGCGGGCATCCAGTTGTACGAGGCGGTCGGCTGCGACGAGTG
CACCGAGGGCTACAAGGGCCGCACCGGCATCTACCAGGTGATGCCGATGACCGATGAGATCGCCACGATCGTGCTGGCCG
GTGGCAACGCGCTGCAGATTGCCGAAGCGGCGCAGCAGATCGGCGTGAATGATCTGCGGCAGTCGGCATTGAAGAAGGCG
GCTGCGGGCATTACCAGCCTAGCCGAGATCAATCGCGTCACCAAGGATTGA

Domains

Predicted by InterproScan.

• Type II/IV secretion system protein (T2SSE) (199-466)

• Type II secretion system (T2SS), protein E, N-terminal domain (MshEN) (50-150)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilB	Acinetobacter baylyi ADP1	54.799	99.479	0.545
pilB	Acinetobacter baumannii D1279779	54.816	99.132	0.543
pilB	Legionella pneumophila strain ERS1305867	51.845	98.785	0.512
pilB	Vibrio cholerae strain A1552	48.947	98.958	0.484
pilF	Neisseria gonorrhoeae MS11	48.682	98.785	0.481
pilB	Vibrio parahaemolyticus RIMD 2210633	45.804	99.306	0.455
pilB	Vibrio campbellii strain DS40M4	45.343	98.785	0.448