Detailed information
Bioinformatically predicted
Overview
| Name | pilC | Type | Machinery gene |
| Locus tag | VN11_RS17185 | Genome accession | NZ_CP011010 |
| Coordinates | 3764685..3765944 (+) | Length | 419 a.a. |
| NCBI ID | WP_053450613.1 | Uniprot ID | - |
| Organism | Stenotrophomonas maltophilia strain ISMMS3 isolate Patient | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 3759685..3770944
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| VN11_RS17170 (VN11_17195) | pilB | 3759901..3761631 (-) | 1731 | WP_053450610.1 | type IV-A pilus assembly ATPase PilB | Machinery gene |
| VN11_RS17175 (VN11_17200) | - | 3761696..3763810 (-) | 2115 | WP_053450611.1 | sulfatase-like hydrolase/transferase | - |
| VN11_RS17180 (VN11_17205) | pilA | 3763913..3764329 (-) | 417 | WP_053450612.1 | pilin | Machinery gene |
| VN11_RS17185 (VN11_17210) | pilC | 3764685..3765944 (+) | 1260 | WP_053450613.1 | type II secretion system F family protein | Machinery gene |
| VN11_RS17190 (VN11_17215) | - | 3765952..3766815 (+) | 864 | WP_008268831.1 | A24 family peptidase | - |
| VN11_RS17195 (VN11_17220) | coaE | 3766827..3767438 (+) | 612 | WP_053450614.1 | dephospho-CoA kinase | - |
| VN11_RS17200 (VN11_17225) | - | 3767757..3768215 (+) | 459 | WP_053450615.1 | pentapeptide repeat-containing protein | - |
| VN11_RS17205 (VN11_17230) | - | 3768423..3768809 (-) | 387 | WP_053450616.1 | hypothetical protein | - |
Sequence
Protein
Download Length: 419 a.a. Molecular weight: 45727.21 Da Isoelectric Point: 9.9671
>NTDB_id=141425 VN11_RS17185 WP_053450613.1 3764685..3765944(+) (pilC) [Stenotrophomonas maltophilia strain ISMMS3 isolate Patient]
MSVSRSAIKNEPVARSTMELQPFVWEGTDKRGVKMKGEQLAKNANLLRAELRRQGINPGQVKPKPKPLFGAAGKAVNAKD
IAFFSRQMATMMKSGVPIVSALDIIASGHKNPRMKKMVDGIRTDIEGGSSLHEAVSKYPVQFDELYRNLVKAGEGAGVLE
TVLDTVATYKENIEALKGKIKKALFYPVMVVVVALLVSAIMLIFVVPQFEEVFHGFGAELPAFTQMIVNLSRFMVSWWWL
IAAVVIGAVVALVMSYKRSLKMQHTMDRLILKVPVIGEVMNNSAIARFARTTAVTFKAGVPLVEALGIVAGATGNKIYEE
AVLRMRDDVSVGYPVNMAMKQLNLFPHMVIQMTGIGEEAGALDAMLFKVAEYYEQEVNNAVDALSSLLEPMIMVFIGVVV
GGMVIGMYLPIFKLGAVVG
MSVSRSAIKNEPVARSTMELQPFVWEGTDKRGVKMKGEQLAKNANLLRAELRRQGINPGQVKPKPKPLFGAAGKAVNAKD
IAFFSRQMATMMKSGVPIVSALDIIASGHKNPRMKKMVDGIRTDIEGGSSLHEAVSKYPVQFDELYRNLVKAGEGAGVLE
TVLDTVATYKENIEALKGKIKKALFYPVMVVVVALLVSAIMLIFVVPQFEEVFHGFGAELPAFTQMIVNLSRFMVSWWWL
IAAVVIGAVVALVMSYKRSLKMQHTMDRLILKVPVIGEVMNNSAIARFARTTAVTFKAGVPLVEALGIVAGATGNKIYEE
AVLRMRDDVSVGYPVNMAMKQLNLFPHMVIQMTGIGEEAGALDAMLFKVAEYYEQEVNNAVDALSSLLEPMIMVFIGVVV
GGMVIGMYLPIFKLGAVVG
Nucleotide
Download Length: 1260 bp
>NTDB_id=141425 VN11_RS17185 WP_053450613.1 3764685..3765944(+) (pilC) [Stenotrophomonas maltophilia strain ISMMS3 isolate Patient]
ATGTCTGTCAGTCGCAGTGCGATCAAGAATGAGCCCGTGGCGCGTAGCACCATGGAGCTGCAACCGTTTGTCTGGGAGGG
GACCGACAAGCGGGGCGTAAAGATGAAGGGCGAGCAGTTGGCGAAGAACGCCAACCTGTTGCGCGCCGAGCTCAGGCGGC
AGGGGATCAACCCCGGCCAGGTGAAGCCCAAGCCGAAACCTCTGTTCGGCGCGGCCGGCAAAGCGGTGAACGCCAAGGAC
ATCGCCTTCTTCAGCCGCCAGATGGCGACCATGATGAAATCCGGCGTACCGATCGTCTCGGCACTGGACATCATCGCCAG
CGGGCACAAGAACCCGCGCATGAAGAAGATGGTTGATGGCATCCGGACTGACATCGAAGGAGGCTCATCCCTGCATGAAG
CCGTCAGCAAGTACCCGGTGCAGTTCGACGAGCTCTACCGCAATCTGGTCAAGGCGGGCGAAGGTGCGGGTGTCCTGGAA
ACGGTGCTGGACACTGTAGCAACCTACAAAGAGAACATCGAAGCCCTGAAGGGCAAGATCAAGAAGGCGCTCTTCTACCC
GGTCATGGTGGTGGTCGTCGCCCTGCTGGTCAGCGCCATCATGCTGATCTTCGTGGTTCCCCAGTTCGAGGAAGTGTTCC
ACGGCTTCGGCGCGGAGCTGCCCGCCTTCACGCAGATGATCGTCAATCTGTCCCGGTTCATGGTGTCGTGGTGGTGGCTC
ATTGCTGCGGTAGTGATCGGAGCAGTCGTTGCCCTCGTCATGAGCTACAAACGCTCGTTGAAGATGCAGCACACCATGGA
CCGGCTGATTCTGAAGGTTCCGGTCATCGGCGAAGTGATGAACAACAGCGCCATTGCCCGCTTCGCCCGTACCACGGCCG
TCACCTTCAAGGCCGGCGTGCCGCTGGTGGAGGCCCTGGGCATCGTCGCGGGGGCCACAGGCAACAAGATCTACGAGGAG
GCCGTCCTGCGCATGCGAGACGACGTCTCGGTGGGTTACCCGGTCAACATGGCGATGAAGCAGCTCAACCTGTTCCCGCA
CATGGTCATCCAGATGACCGGCATCGGCGAAGAGGCCGGCGCCCTGGATGCGATGCTGTTCAAGGTGGCCGAGTACTATG
AGCAGGAGGTCAACAATGCCGTTGACGCCCTGAGCAGCCTGCTCGAACCAATGATCATGGTCTTCATCGGCGTGGTCGTT
GGCGGTATGGTCATCGGCATGTACCTTCCCATCTTCAAACTCGGCGCCGTCGTCGGATAA
ATGTCTGTCAGTCGCAGTGCGATCAAGAATGAGCCCGTGGCGCGTAGCACCATGGAGCTGCAACCGTTTGTCTGGGAGGG
GACCGACAAGCGGGGCGTAAAGATGAAGGGCGAGCAGTTGGCGAAGAACGCCAACCTGTTGCGCGCCGAGCTCAGGCGGC
AGGGGATCAACCCCGGCCAGGTGAAGCCCAAGCCGAAACCTCTGTTCGGCGCGGCCGGCAAAGCGGTGAACGCCAAGGAC
ATCGCCTTCTTCAGCCGCCAGATGGCGACCATGATGAAATCCGGCGTACCGATCGTCTCGGCACTGGACATCATCGCCAG
CGGGCACAAGAACCCGCGCATGAAGAAGATGGTTGATGGCATCCGGACTGACATCGAAGGAGGCTCATCCCTGCATGAAG
CCGTCAGCAAGTACCCGGTGCAGTTCGACGAGCTCTACCGCAATCTGGTCAAGGCGGGCGAAGGTGCGGGTGTCCTGGAA
ACGGTGCTGGACACTGTAGCAACCTACAAAGAGAACATCGAAGCCCTGAAGGGCAAGATCAAGAAGGCGCTCTTCTACCC
GGTCATGGTGGTGGTCGTCGCCCTGCTGGTCAGCGCCATCATGCTGATCTTCGTGGTTCCCCAGTTCGAGGAAGTGTTCC
ACGGCTTCGGCGCGGAGCTGCCCGCCTTCACGCAGATGATCGTCAATCTGTCCCGGTTCATGGTGTCGTGGTGGTGGCTC
ATTGCTGCGGTAGTGATCGGAGCAGTCGTTGCCCTCGTCATGAGCTACAAACGCTCGTTGAAGATGCAGCACACCATGGA
CCGGCTGATTCTGAAGGTTCCGGTCATCGGCGAAGTGATGAACAACAGCGCCATTGCCCGCTTCGCCCGTACCACGGCCG
TCACCTTCAAGGCCGGCGTGCCGCTGGTGGAGGCCCTGGGCATCGTCGCGGGGGCCACAGGCAACAAGATCTACGAGGAG
GCCGTCCTGCGCATGCGAGACGACGTCTCGGTGGGTTACCCGGTCAACATGGCGATGAAGCAGCTCAACCTGTTCCCGCA
CATGGTCATCCAGATGACCGGCATCGGCGAAGAGGCCGGCGCCCTGGATGCGATGCTGTTCAAGGTGGCCGAGTACTATG
AGCAGGAGGTCAACAATGCCGTTGACGCCCTGAGCAGCCTGCTCGAACCAATGATCATGGTCTTCATCGGCGTGGTCGTT
GGCGGTATGGTCATCGGCATGTACCTTCCCATCTTCAAACTCGGCGCCGTCGTCGGATAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilC | Legionella pneumophila strain ERS1305867 |
52.439 |
97.852 |
0.513 |
| pilC | Pseudomonas stutzeri DSM 10701 |
53.535 |
94.511 |
0.506 |
| pilC | Acinetobacter baumannii D1279779 |
50.63 |
94.749 |
0.48 |
| pilC | Acinetobacter baylyi ADP1 |
49.261 |
96.897 |
0.477 |
| pilG | Neisseria gonorrhoeae MS11 |
43.829 |
94.749 |
0.415 |
| pilG | Neisseria meningitidis 44/76-A |
43.577 |
94.749 |
0.413 |
| pilC | Vibrio cholerae strain A1552 |
41.872 |
96.897 |
0.406 |
| pilC | Vibrio campbellii strain DS40M4 |
41.646 |
95.704 |
0.399 |