Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilT   Type   Machinery gene
Locus tag   FD63_RS12840 Genome accession   NZ_CP008714
Coordinates   3047640..3048677 (-) Length   345 a.a.
NCBI ID   WP_003471666.1    Uniprot ID   A0A0K2ZRY0
Organism   Xanthomonas translucens pv. undulosa strain Xtu 4699     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3042640..3053677
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FD63_RS12820 (FD63_13250) - 3043070..3043636 (-) 567 WP_003471660.1 YqgE/AlgH family protein -
  FD63_RS12825 (FD63_13255) - 3043744..3045552 (+) 1809 WP_047325119.1 DUF4153 domain-containing protein -
  FD63_RS12830 (FD63_13260) - 3045568..3046107 (+) 540 WP_003471664.1 DNA-3-methyladenine glycosylase I -
  FD63_RS12835 (FD63_13265) pilU 3046361..3047491 (-) 1131 WP_003471665.1 PilT/PilU family type 4a pilus ATPase Machinery gene
  FD63_RS12840 (FD63_13270) pilT 3047640..3048677 (-) 1038 WP_003471666.1 type IV pilus twitching motility protein PilT Machinery gene
  FD63_RS12845 (FD63_13275) - 3048766..3049452 (+) 687 WP_080627705.1 YggS family pyridoxal phosphate-dependent enzyme -
  FD63_RS12850 (FD63_13280) - 3049860..3050792 (+) 933 WP_230811868.1 hypothetical protein -
  FD63_RS12855 (FD63_13285) proC 3050935..3051783 (+) 849 WP_038239378.1 pyrroline-5-carboxylate reductase -
  FD63_RS12860 (FD63_13290) - 3051798..3052253 (+) 456 WP_003471670.1 DUF4426 domain-containing protein -
  FD63_RS12865 (FD63_13295) soxR 3052392..3052829 (-) 438 WP_003471671.1 redox-sensitive transcriptional activator SoxR -

Sequence

Protein


Download         Length: 345 a.a.        Molecular weight: 38599.24 Da        Isoelectric Point: 6.6650

>NTDB_id=123846 FD63_RS12840 WP_003471666.1 3047640..3048677(-) (pilT) [Xanthomonas translucens pv. undulosa strain Xtu 4699]
MDIAELLAFSVKNKASDLHLSAGLPPMIRVDGDVRRINIPALDHKQVHALVYDIMSDKQRRDYEEFLEVDFSFEIPSLAR
FRVNAFNQNRGAGAVFRTIPSEVLTLEDLGCPPIFRQLIDQPQGLILVTGPTGSGKSTTLAGMIDYINKNEYGHILTVED
PIEFVHTSQKCLINQREVHRDTHGFNEALRSALREDPDIILVGELRDLETIRLALTAAETGHLVFGTLHTSSAAKTIDRI
IDVFPAGEKPMVRSMLSESLRAVISQALLKKVGGGRTAAWEIMVGTPAIRNLIREDKVAQMYSAIQTGQQYGMQTLDQHL
QDLVKRSLITRNQARDYAKDKRVFE

Nucleotide


Download         Length: 1038 bp        

>NTDB_id=123846 FD63_RS12840 WP_003471666.1 3047640..3048677(-) (pilT) [Xanthomonas translucens pv. undulosa strain Xtu 4699]
ATGGATATCGCTGAACTATTGGCGTTCTCGGTCAAGAACAAAGCGTCCGACCTGCACCTGTCCGCCGGCCTGCCGCCGAT
GATCCGGGTCGATGGCGACGTCCGCCGCATCAACATCCCGGCACTGGACCACAAGCAGGTGCATGCGCTGGTGTACGACA
TCATGTCGGACAAGCAGCGCCGCGACTACGAAGAGTTCCTCGAAGTGGACTTCTCGTTCGAGATTCCCAGCCTGGCGCGC
TTCCGCGTCAACGCGTTCAACCAGAACCGCGGCGCTGGTGCGGTGTTCCGTACCATTCCGTCCGAAGTGCTGACCCTGGA
AGACCTCGGTTGCCCGCCGATCTTCCGTCAGCTGATCGACCAGCCGCAGGGCCTGATCCTGGTCACCGGTCCGACCGGCT
CGGGCAAGTCGACCACGCTCGCCGGCATGATCGATTACATCAACAAGAACGAATACGGCCACATCCTCACCGTCGAGGAT
CCGATCGAATTTGTGCACACCTCGCAAAAGTGCCTGATCAACCAGCGCGAAGTGCACCGCGACACGCACGGTTTCAATGA
AGCGCTGCGCTCGGCGCTGCGCGAAGACCCGGACATCATCCTGGTCGGCGAGTTGCGCGACCTGGAAACCATCCGCCTGG
CGCTGACCGCTGCGGAAACCGGTCACCTGGTGTTCGGCACCCTGCACACCAGTTCGGCGGCCAAGACCATCGACCGCATC
ATCGACGTATTCCCGGCCGGCGAAAAGCCGATGGTGCGCTCGATGCTGTCCGAATCTTTGCGCGCGGTGATCTCGCAGGC
GCTGCTCAAGAAGGTCGGCGGCGGCCGCACCGCGGCGTGGGAGATCATGGTCGGCACCCCGGCGATCCGCAACCTGATCC
GCGAGGACAAGGTGGCGCAGATGTACTCGGCGATCCAGACCGGCCAGCAGTACGGCATGCAGACCCTGGACCAGCACCTG
CAGGATCTGGTCAAGCGCAGCCTGATCACCCGCAACCAGGCGCGCGACTACGCCAAGGACAAGCGGGTCTTCGAGTGA

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(11-270)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0K2ZRY0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilT Acinetobacter nosocomialis M2

80.233

99.71

0.8
  pilT Acinetobacter baumannii D1279779

80.233

99.71

0.8
  pilT Acinetobacter baumannii strain A118

80.233

99.71

0.8
  pilT Pseudomonas stutzeri DSM 10701

78.779

99.71

0.786
  pilT Acinetobacter baylyi ADP1

78.488

99.71

0.783
  pilT Pseudomonas aeruginosa PAK

79.056

98.261

0.777
  pilT Legionella pneumophila strain Lp02

74.709

99.71

0.745
  pilT Legionella pneumophila strain ERS1305867

74.709

99.71

0.745
  pilT Vibrio cholerae O1 biovar El Tor strain E7946

71.125

95.362

0.678
  pilT Vibrio cholerae strain A1552

71.125

95.362

0.678
  pilT Neisseria meningitidis 8013

65.982

98.841

0.652
  pilT Neisseria gonorrhoeae MS11

65.689

98.841

0.649
  pilT Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

49.565

100

0.496
  pilU Pseudomonas stutzeri DSM 10701

40.23

100

0.406
  pilU Vibrio cholerae strain A1552

40.23

100

0.406
  pilU Acinetobacter baylyi ADP1

40.294

98.551

0.397

Multiple sequence alignment