Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   BE73_RS04675 Genome accession   NZ_CP007221
Coordinates   1029610..1030035 (+) Length   141 a.a.
NCBI ID   WP_044749928.1    Uniprot ID   -
Organism   Xanthomonas oryzae pv. oryzicola strain CFBP7342     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1024610..1035035
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BE73_RS04660 (BE73_04980) coaE 1026505..1027113 (-) 609 WP_014504326.1 dephospho-CoA kinase -
  BE73_RS04665 (BE73_04985) - 1027127..1027990 (-) 864 WP_014504325.1 A24 family peptidase -
  BE73_RS04670 (BE73_04990) pilC 1027997..1029256 (-) 1260 WP_014504324.1 type II secretion system F family protein Machinery gene
  BE73_RS04675 (BE73_04995) pilA 1029610..1030035 (+) 426 WP_044749928.1 pilin Machinery gene
  BE73_RS04680 (BE73_05000) - 1030171..1031760 (+) 1590 WP_044749929.1 phosphoethanolamine transferase -
  BE73_RS04685 (BE73_05005) - 1031771..1032400 (+) 630 WP_024711608.1 hypothetical protein -
  BE73_RS04690 (BE73_05010) - 1032370..1033896 (+) 1527 WP_044749930.1 membrane protein -

Sequence

Protein


Download         Length: 141 a.a.        Molecular weight: 14412.69 Da        Isoelectric Point: 9.0011

>NTDB_id=117914 BE73_RS04675 WP_044749928.1 1029610..1030035(+) (pilA) [Xanthomonas oryzae pv. oryzicola strain CFBP7342]
MKKQQGFTLIELMIVVAIIAILAAIALPAYQDYTTRAKLSEALTMSAPAKLAVAETSSSLGGVANVTLANSGYVFPGETK
YVSAVTIASGTGKVTVTSKVPNAGGDIVLTPTDVGGGQLKWTCSSAIPTKYLPAECRSSGT

Nucleotide


Download         Length: 426 bp        

>NTDB_id=117914 BE73_RS04675 WP_044749928.1 1029610..1030035(+) (pilA) [Xanthomonas oryzae pv. oryzicola strain CFBP7342]
ATGAAGAAGCAGCAAGGCTTTACACTTATCGAACTGATGATCGTGGTCGCGATCATCGCCATCCTGGCTGCCATCGCGCT
GCCGGCTTATCAGGACTACACCACTCGTGCCAAGCTCAGTGAAGCGCTGACGATGTCGGCACCTGCCAAGCTTGCGGTAG
CGGAGACTTCATCGTCGCTCGGCGGTGTTGCTAATGTTACTCTCGCGAATTCGGGCTACGTATTCCCGGGTGAAACGAAG
TATGTCAGCGCCGTCACTATCGCCAGTGGCACGGGTAAAGTCACTGTGACCTCCAAGGTGCCCAACGCTGGCGGTGACAT
CGTGCTGACCCCGACTGACGTCGGTGGCGGCCAGCTGAAGTGGACCTGCTCTTCCGCCATCCCCACCAAGTACCTGCCGG
CGGAGTGCCGTAGCTCGGGCACCTGA

Domains

Predicted by InterproScan.

Pilin (bacterial filament) (Pilin)

(35-137)

Prokaryotic N-terminal methylation motif (N_methyl)

(1-27)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Ralstonia pseudosolanacearum GMI1000

43.902

100

0.511
  pilA2 Legionella pneumophila str. Paris

50.735

96.454

0.489
  pilA2 Legionella pneumophila strain ERS1305867

50

96.454

0.482
  comP Acinetobacter baylyi ADP1

41.83

100

0.454
  pilE Neisseria gonorrhoeae strain FA1090

36.471

100

0.44
  pilE Neisseria gonorrhoeae MS11

38.037

100

0.44
  pilE Neisseria elongata subsp. glycolytica ATCC 29315

32.804

100

0.44
  pilA/pilA1 Eikenella corrodens VA1

39.333

100

0.418
  pilA/pilAI Pseudomonas stutzeri DSM 10701

42.029

97.872

0.411
  pilA/pilAII Pseudomonas stutzeri DSM 10701

41.606

97.163

0.404
  pilA Pseudomonas aeruginosa PAK

36.424

100

0.39
  pilA Acinetobacter baumannii strain A118

38.298

100

0.383
  pilA Vibrio cholerae C6706

30.909

100

0.362
  pilA Vibrio cholerae strain A1552

30.909

100

0.362
  pilA Vibrio cholerae O1 biovar El Tor strain E7946

30.909

100

0.362
  pilA Glaesserella parasuis strain SC1401

38.636

93.617

0.362

Multiple sequence alignment