Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilT   Type   Machinery gene
Locus tag   LQ142_RS04085 Genome accession   NZ_OW969904
Coordinates   840759..841739 (+) Length   326 a.a.
NCBI ID   WP_137347991.1    Uniprot ID   -
Organism   Citrobacter freundii isolate 0     
Function   type IV pilus retraction (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 835759..846739
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LQ142_RS04055 (AI3057V1_0797) ansB 836291..837337 (+) 1047 WP_139935784.1 L-asparaginase 2 -
  LQ142_RS04060 (AI3057V1_0798) hemW 837435..838571 (-) 1137 WP_230126903.1 radical SAM family heme chaperone HemW -
  LQ142_RS04065 (AI3057V1_0799) - 838564..839157 (-) 594 WP_003027104.1 XTP/dITP diphosphatase -
  LQ142_RS04070 (AI3057V1_0800) yggU 839165..839455 (-) 291 WP_003027101.1 DUF167 family protein YggU -
  LQ142_RS04075 (AI3057V1_0801) - 839452..840018 (-) 567 WP_003027097.1 YggT family protein -
  LQ142_RS04080 (AI3057V1_0802) - 840037..840741 (-) 705 WP_230126905.1 YggS family pyridoxal phosphate-dependent enzyme -
  LQ142_RS04085 (AI3057V1_0803) pilT 840759..841739 (+) 981 WP_137347991.1 type IV pilus twitching motility protein PilT Machinery gene
  LQ142_RS04090 (AI3057V1_0804) ruvX 841736..842152 (-) 417 WP_003027087.1 Holliday junction resolvase RuvX -
  LQ142_RS04095 (AI3057V1_0805) - 842152..842715 (-) 564 WP_003027086.1 YqgE/AlgH family protein -
  LQ142_RS04100 (AI3057V1_0806) gshB 842827..843774 (-) 948 WP_003027083.1 glutathione synthase -
  LQ142_RS04105 (AI3057V1_0807) rsmE 843794..844525 (-) 732 WP_200061247.1 16S rRNA (uracil(1498)-N(3))-methyltransferase -
  LQ142_RS04110 (AI3057V1_0808) endA 844600..845307 (-) 708 WP_003846364.1 deoxyribonuclease I -
  LQ142_RS04115 (AI3057V1_0809) - 845402..845899 (-) 498 WP_003846365.1 SprT family zinc-dependent metalloprotease -

Sequence

Protein


Download         Length: 326 a.a.        Molecular weight: 35862.94 Da        Isoelectric Point: 6.3638

>NTDB_id=1153702 LQ142_RS04085 WP_137347991.1 840759..841739(+) (pilT) [Citrobacter freundii isolate 0]
MNMEEIVALSVKHNVSDLHLCNAWPARWRRHGKVESAPFTAPDVENLLMCWLSEQQQVQLQEQGQIDFAVTLTDSRRLRA
SAFVHLQGTSLALRLLPLDCPHLDDLQPPAVIPELLHSENGLILVTGATGSGKSTTLAAMVEYLNQHIEGHILTLEDPIE
YRYTSRRCLIQQREVGAHCASFAAGLRGALREDPDVILLGELRDVETIRLALTAAETGHLVLATLHTRGAAQAIARLVDS
FAATEKDPVRNQLADSLRAVLSQKLEEDKQGGRVALFELLVNTPAVGNLIREGKTHQLPGVIQTGQQTGMQTFAQSLQQR
QAQGRL

Nucleotide


Download         Length: 981 bp        

>NTDB_id=1153702 LQ142_RS04085 WP_137347991.1 840759..841739(+) (pilT) [Citrobacter freundii isolate 0]
ATGAATATGGAAGAAATAGTGGCCCTTAGTGTAAAGCATAACGTGTCGGATCTACACCTGTGCAATGCATGGCCTGCGCG
TTGGCGCAGACATGGAAAAGTCGAAAGCGCACCGTTTACTGCGCCTGACGTAGAGAATCTGCTGATGTGCTGGCTCAGTG
AGCAACAACAGGTACAGTTGCAGGAGCAAGGGCAGATTGATTTTGCCGTTACCCTGACGGACTCCCGGCGGCTGCGCGCC
AGCGCATTTGTCCATCTGCAGGGAACCTCGCTGGCGCTAAGACTGCTACCGCTGGATTGTCCTCATTTAGACGATCTTCA
GCCTCCCGCGGTCATACCTGAACTGCTTCACAGTGAAAATGGGTTGATTCTGGTGACAGGCGCTACCGGCAGCGGTAAAT
CTACGACCCTGGCGGCGATGGTGGAGTATCTTAATCAGCATATTGAGGGGCACATTCTGACGCTGGAAGATCCTATTGAA
TATCGCTACACCAGCCGACGTTGTCTGATTCAACAGCGGGAGGTGGGCGCACACTGCGCCTCTTTCGCCGCCGGTTTGCG
CGGTGCGCTACGCGAAGATCCCGACGTTATTTTGCTGGGCGAGCTGCGCGACGTGGAAACCATTCGGCTGGCATTAACGG
CGGCGGAAACCGGACATCTGGTGCTGGCAACGTTACATACGCGAGGTGCGGCGCAGGCCATCGCGCGGCTGGTGGATTCC
TTTGCAGCAACAGAGAAAGATCCTGTGCGTAACCAACTGGCAGACAGCCTGCGGGCGGTTCTTTCGCAAAAACTTGAGGA
GGATAAGCAGGGGGGACGCGTGGCGCTATTCGAACTACTCGTCAACACGCCCGCCGTGGGCAATTTGATCCGCGAAGGGA
AAACGCATCAGCTACCCGGCGTGATTCAAACCGGGCAGCAGACAGGTATGCAGACATTTGCACAAAGTTTGCAGCAGCGA
CAGGCGCAGGGGCGGCTTTAA

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(64-265)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilT Vibrio cholerae strain A1552

49.541

100

0.497
  pilT Vibrio cholerae O1 biovar El Tor strain E7946

49.541

100

0.497
  pilT Neisseria meningitidis 8013

47.256

100

0.475
  pilT Neisseria gonorrhoeae MS11

46.951

100

0.472
  pilT Acinetobacter baylyi ADP1

46.789

100

0.469
  pilT Pseudomonas stutzeri DSM 10701

46.483

100

0.466
  pilT Acinetobacter baumannii strain A118

46.177

100

0.463
  pilT Acinetobacter baumannii D1279779

46.177

100

0.463
  pilT Acinetobacter nosocomialis M2

45.872

100

0.46
  pilT Pseudomonas aeruginosa PAK

45.566

100

0.457
  pilT Legionella pneumophila strain ERS1305867

45.963

98.773

0.454
  pilT Legionella pneumophila strain Lp02

45.963

98.773

0.454
  pilT Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

41.64

97.239

0.405
  pilU Pseudomonas stutzeri DSM 10701

38.182

100

0.387
  pilU Vibrio cholerae strain A1552

39.13

98.773

0.386
  pilU Acinetobacter baylyi ADP1

36.842

99.08

0.365

Multiple sequence alignment