Detailed information
Bioinformatically predicted
Overview
| Name | pilA/pilA1 | Type | Machinery gene |
| Locus tag | KOD61_RS13095 | Genome accession | NZ_OU015430 |
| Coordinates | 2362985..2363413 (+) | Length | 142 a.a. |
| NCBI ID | WP_215218728.1 | Uniprot ID | - |
| Organism | Novilysobacter luteus strain CECT 30171 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 2357985..2368413
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| KOD61_RS11105 (LYB30171_02216) | - | 2358112..2361105 (-) | 2994 | WP_215218726.1 | type VI secretion system Vgr family protein | - |
| KOD61_RS11110 (LYB30171_02217) | pilR | 2361289..2362689 (+) | 1401 | WP_215218727.1 | sigma-54 dependent transcriptional regulator | Regulator |
| KOD61_RS13095 (LYB30171_02218) | pilA/pilA1 | 2362985..2363413 (+) | 429 | WP_215218728.1 | pilin | Machinery gene |
| KOD61_RS11120 (LYB30171_02219) | pilB | 2363569..2365299 (+) | 1731 | WP_215218729.1 | type IV-A pilus assembly ATPase PilB | Machinery gene |
| KOD61_RS11125 (LYB30171_02220) | pilC | 2365559..2366818 (+) | 1260 | WP_215218730.1 | type II secretion system F family protein | Machinery gene |
| KOD61_RS11130 (LYB30171_02221) | - | 2366844..2367707 (+) | 864 | WP_215218731.1 | A24 family peptidase | - |
Sequence
Protein
Download Length: 142 a.a. Molecular weight: 14283.28 Da Isoelectric Point: 4.2811
>NTDB_id=1151004 KOD61_RS13095 WP_215218728.1 2362985..2363413(+) (pilA/pilA1) [Novilysobacter luteus strain CECT 30171]
MKNQKGFTLIELMIVVAIIAILAAIALPAYQDYTARAQASEALTATGGTRADIAVSVAENDAFPAAGDPVIAATALLDGK
YFAAGGATLAPDTGVISVVFDDGALNGQTMTITPALSANGDQISGWTCAGLTKASHIPSGCR
MKNQKGFTLIELMIVVAIIAILAAIALPAYQDYTARAQASEALTATGGTRADIAVSVAENDAFPAAGDPVIAATALLDGK
YFAAGGATLAPDTGVISVVFDDGALNGQTMTITPALSANGDQISGWTCAGLTKASHIPSGCR
Nucleotide
Download Length: 429 bp
>NTDB_id=1151004 KOD61_RS13095 WP_215218728.1 2362985..2363413(+) (pilA/pilA1) [Novilysobacter luteus strain CECT 30171]
ATGAAGAACCAGAAGGGCTTTACCCTCATCGAACTGATGATCGTCGTTGCGATCATCGCCATCCTGGCCGCCATTGCTCT
GCCGGCTTACCAGGATTACACCGCTCGCGCGCAGGCTTCCGAAGCGCTCACCGCGACGGGCGGAACGCGGGCCGACATCG
CTGTTTCGGTTGCGGAGAATGACGCTTTTCCGGCCGCAGGTGACCCGGTGATCGCCGCAACCGCCCTTCTCGATGGCAAG
TACTTTGCCGCTGGTGGCGCAACTCTGGCCCCCGATACCGGCGTCATCTCGGTTGTCTTCGACGATGGCGCCCTCAATGG
CCAGACGATGACGATCACCCCGGCACTCTCCGCCAATGGTGATCAGATTTCGGGGTGGACTTGCGCGGGTCTCACGAAGG
CCTCCCACATCCCGTCGGGCTGCCGCTGA
ATGAAGAACCAGAAGGGCTTTACCCTCATCGAACTGATGATCGTCGTTGCGATCATCGCCATCCTGGCCGCCATTGCTCT
GCCGGCTTACCAGGATTACACCGCTCGCGCGCAGGCTTCCGAAGCGCTCACCGCGACGGGCGGAACGCGGGCCGACATCG
CTGTTTCGGTTGCGGAGAATGACGCTTTTCCGGCCGCAGGTGACCCGGTGATCGCCGCAACCGCCCTTCTCGATGGCAAG
TACTTTGCCGCTGGTGGCGCAACTCTGGCCCCCGATACCGGCGTCATCTCGGTTGTCTTCGACGATGGCGCCCTCAATGG
CCAGACGATGACGATCACCCCGGCACTCTCCGCCAATGGTGATCAGATTTCGGGGTGGACTTGCGCGGGTCTCACGAAGG
CCTCCCACATCCCGTCGGGCTGCCGCTGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilA/pilA1 | Eikenella corrodens VA1 |
54.305 |
100 |
0.577 |
| pilA2 | Legionella pneumophila str. Paris |
44.755 |
100 |
0.451 |
| pilA2 | Legionella pneumophila strain ERS1305867 |
44.755 |
100 |
0.451 |
| pilE | Neisseria gonorrhoeae strain FA1090 |
39.623 |
100 |
0.444 |
| comP | Acinetobacter baylyi ADP1 |
38.667 |
100 |
0.408 |
| pilE | Neisseria gonorrhoeae MS11 |
35.404 |
100 |
0.401 |
| pilA | Ralstonia pseudosolanacearum GMI1000 |
37.333 |
100 |
0.394 |
| pilA | Pseudomonas aeruginosa PAK |
34.81 |
100 |
0.387 |
| pilA | Vibrio cholerae O1 biovar El Tor strain E7946 |
36.735 |
100 |
0.38 |
| pilA | Vibrio cholerae strain A1552 |
36.735 |
100 |
0.38 |
| pilA | Vibrio cholerae C6706 |
36.735 |
100 |
0.38 |
| pilA/pilAI | Pseudomonas stutzeri DSM 10701 |
37.324 |
100 |
0.373 |
| pilA/pilAII | Pseudomonas stutzeri DSM 10701 |
36.054 |
100 |
0.373 |