Detailed information
Bioinformatically predicted
Overview
| Name | pilC | Type | Machinery gene |
| Locus tag | KOD61_RS11125 | Genome accession | NZ_OU015430 |
| Coordinates | 2365559..2366818 (+) | Length | 419 a.a. |
| NCBI ID | WP_215218730.1 | Uniprot ID | - |
| Organism | Novilysobacter luteus strain CECT 30171 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 2360559..2371818
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| KOD61_RS11110 (LYB30171_02217) | pilR | 2361289..2362689 (+) | 1401 | WP_215218727.1 | sigma-54 dependent transcriptional regulator | Regulator |
| KOD61_RS13095 (LYB30171_02218) | pilA/pilA1 | 2362985..2363413 (+) | 429 | WP_215218728.1 | pilin | Machinery gene |
| KOD61_RS11120 (LYB30171_02219) | pilB | 2363569..2365299 (+) | 1731 | WP_215218729.1 | type IV-A pilus assembly ATPase PilB | Machinery gene |
| KOD61_RS11125 (LYB30171_02220) | pilC | 2365559..2366818 (+) | 1260 | WP_215218730.1 | type II secretion system F family protein | Machinery gene |
| KOD61_RS11130 (LYB30171_02221) | - | 2366844..2367707 (+) | 864 | WP_215218731.1 | A24 family peptidase | - |
| KOD61_RS11135 (LYB30171_02222) | coaE | 2367934..2368548 (+) | 615 | WP_215218732.1 | dephospho-CoA kinase | - |
| KOD61_RS11140 (LYB30171_02223) | - | 2368650..2369684 (-) | 1035 | WP_215218733.1 | Nudix family hydrolase | - |
Sequence
Protein
Download Length: 419 a.a. Molecular weight: 45277.42 Da Isoelectric Point: 9.8528
>NTDB_id=1151001 KOD61_RS11125 WP_215218730.1 2365559..2366818(+) (pilC) [Novilysobacter luteus strain CECT 30171]
MSATRSAAKPSTPVRRAEALSMFVWEGTDKRGVVMKGEQVAKNANFLRAELRRQGITPKVVKPKPKPLFGSAGKPVTPLD
IAIFSRQIATMMKAGVPIVGALEIISSGNKNVRMQKMVNAIRADVESGSSLSESIGKHPVQFDELYRNLVRAGESAGVLE
TVLDTVATYKENLEALKGKIKKALFYPAMVMAVALLVSAILLIFVVPTFEDVFQGFGADLPAFTQMVIGLSDFMVAWWWL
IALGLAGAGVATVMAFKRSTAFQHFVDRMVLKLPVIGQIMHNSSIARFARTLAVTFKAGVPLVEALDTVAGATGNTVYEE
AVFRVRDDVAVGYPVNMAMKQTNLFPHMVVQMTAIGEEAGALDTMLFKVAEFYEQEVNNAVDALSSLLEPLIMVFLGVIV
GGMVIAMYLPIFKLGAVVG
MSATRSAAKPSTPVRRAEALSMFVWEGTDKRGVVMKGEQVAKNANFLRAELRRQGITPKVVKPKPKPLFGSAGKPVTPLD
IAIFSRQIATMMKAGVPIVGALEIISSGNKNVRMQKMVNAIRADVESGSSLSESIGKHPVQFDELYRNLVRAGESAGVLE
TVLDTVATYKENLEALKGKIKKALFYPAMVMAVALLVSAILLIFVVPTFEDVFQGFGADLPAFTQMVIGLSDFMVAWWWL
IALGLAGAGVATVMAFKRSTAFQHFVDRMVLKLPVIGQIMHNSSIARFARTLAVTFKAGVPLVEALDTVAGATGNTVYEE
AVFRVRDDVAVGYPVNMAMKQTNLFPHMVVQMTAIGEEAGALDTMLFKVAEFYEQEVNNAVDALSSLLEPLIMVFLGVIV
GGMVIAMYLPIFKLGAVVG
Nucleotide
Download Length: 1260 bp
>NTDB_id=1151001 KOD61_RS11125 WP_215218730.1 2365559..2366818(+) (pilC) [Novilysobacter luteus strain CECT 30171]
ATGTCCGCGACCCGATCCGCCGCCAAGCCGAGCACTCCCGTGCGTCGTGCAGAGGCACTGTCGATGTTTGTCTGGGAGGG
CACTGACAAGCGCGGTGTCGTGATGAAAGGCGAGCAGGTGGCGAAGAACGCCAACTTCTTGCGCGCCGAACTACGTCGAC
AGGGCATCACGCCGAAGGTGGTGAAGCCCAAGCCCAAGCCGCTGTTCGGCAGTGCCGGCAAGCCGGTCACTCCGTTGGAC
ATCGCCATCTTCAGCCGCCAGATCGCGACGATGATGAAGGCAGGCGTACCGATCGTCGGCGCCTTGGAGATTATCTCCAG
CGGCAACAAGAATGTTCGGATGCAGAAGATGGTCAACGCCATCCGCGCCGATGTGGAGAGCGGCTCTTCGCTGAGCGAGT
CGATCGGCAAGCATCCCGTCCAGTTCGATGAGTTGTATCGAAATCTGGTCCGGGCCGGCGAGTCGGCCGGTGTTCTTGAA
ACCGTGCTAGACACCGTCGCGACCTACAAGGAAAACCTGGAGGCGCTGAAAGGTAAAATCAAGAAAGCGCTCTTTTACCC
TGCAATGGTTATGGCGGTTGCTTTATTGGTGAGTGCGATCCTGCTGATCTTTGTCGTCCCGACTTTCGAAGATGTTTTCC
AAGGATTTGGCGCGGATCTCCCCGCATTTACTCAGATGGTGATCGGCTTGAGCGACTTCATGGTCGCTTGGTGGTGGCTG
ATCGCGCTGGGCCTTGCAGGCGCTGGTGTTGCAACCGTTATGGCGTTCAAACGGTCGACCGCCTTCCAACACTTCGTCGA
TCGTATGGTCCTCAAACTGCCGGTGATCGGTCAGATCATGCACAACTCGTCGATCGCACGGTTCGCCCGTACTCTTGCGG
TGACCTTCAAGGCCGGCGTGCCGCTTGTGGAGGCACTAGATACGGTCGCCGGTGCTACGGGCAACACCGTATATGAGGAG
GCAGTCTTCCGCGTTCGTGACGACGTCGCCGTGGGATATCCGGTGAACATGGCGATGAAGCAGACCAATCTGTTCCCGCA
CATGGTGGTCCAAATGACCGCCATCGGTGAAGAGGCCGGTGCGCTGGATACCATGCTGTTCAAGGTCGCCGAGTTCTACG
AACAGGAGGTCAACAATGCGGTCGACGCGCTCTCCAGCCTGCTCGAACCGTTGATCATGGTTTTCCTCGGCGTGATCGTG
GGTGGCATGGTGATCGCCATGTACCTCCCGATCTTCAAGCTCGGCGCAGTGGTCGGCTAA
ATGTCCGCGACCCGATCCGCCGCCAAGCCGAGCACTCCCGTGCGTCGTGCAGAGGCACTGTCGATGTTTGTCTGGGAGGG
CACTGACAAGCGCGGTGTCGTGATGAAAGGCGAGCAGGTGGCGAAGAACGCCAACTTCTTGCGCGCCGAACTACGTCGAC
AGGGCATCACGCCGAAGGTGGTGAAGCCCAAGCCCAAGCCGCTGTTCGGCAGTGCCGGCAAGCCGGTCACTCCGTTGGAC
ATCGCCATCTTCAGCCGCCAGATCGCGACGATGATGAAGGCAGGCGTACCGATCGTCGGCGCCTTGGAGATTATCTCCAG
CGGCAACAAGAATGTTCGGATGCAGAAGATGGTCAACGCCATCCGCGCCGATGTGGAGAGCGGCTCTTCGCTGAGCGAGT
CGATCGGCAAGCATCCCGTCCAGTTCGATGAGTTGTATCGAAATCTGGTCCGGGCCGGCGAGTCGGCCGGTGTTCTTGAA
ACCGTGCTAGACACCGTCGCGACCTACAAGGAAAACCTGGAGGCGCTGAAAGGTAAAATCAAGAAAGCGCTCTTTTACCC
TGCAATGGTTATGGCGGTTGCTTTATTGGTGAGTGCGATCCTGCTGATCTTTGTCGTCCCGACTTTCGAAGATGTTTTCC
AAGGATTTGGCGCGGATCTCCCCGCATTTACTCAGATGGTGATCGGCTTGAGCGACTTCATGGTCGCTTGGTGGTGGCTG
ATCGCGCTGGGCCTTGCAGGCGCTGGTGTTGCAACCGTTATGGCGTTCAAACGGTCGACCGCCTTCCAACACTTCGTCGA
TCGTATGGTCCTCAAACTGCCGGTGATCGGTCAGATCATGCACAACTCGTCGATCGCACGGTTCGCCCGTACTCTTGCGG
TGACCTTCAAGGCCGGCGTGCCGCTTGTGGAGGCACTAGATACGGTCGCCGGTGCTACGGGCAACACCGTATATGAGGAG
GCAGTCTTCCGCGTTCGTGACGACGTCGCCGTGGGATATCCGGTGAACATGGCGATGAAGCAGACCAATCTGTTCCCGCA
CATGGTGGTCCAAATGACCGCCATCGGTGAAGAGGCCGGTGCGCTGGATACCATGCTGTTCAAGGTCGCCGAGTTCTACG
AACAGGAGGTCAACAATGCGGTCGACGCGCTCTCCAGCCTGCTCGAACCGTTGATCATGGTTTTCCTCGGCGTGATCGTG
GGTGGCATGGTGATCGCCATGTACCTCCCGATCTTCAAGCTCGGCGCAGTGGTCGGCTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilC | Legionella pneumophila strain ERS1305867 |
54.815 |
96.659 |
0.53 |
| pilC | Pseudomonas stutzeri DSM 10701 |
55.779 |
94.988 |
0.53 |
| pilC | Acinetobacter baumannii D1279779 |
51.232 |
96.897 |
0.496 |
| pilC | Acinetobacter baylyi ADP1 |
50.617 |
96.659 |
0.489 |
| pilG | Neisseria gonorrhoeae MS11 |
45.409 |
96.181 |
0.437 |
| pilG | Neisseria meningitidis 44/76-A |
44.802 |
96.42 |
0.432 |
| pilC | Vibrio cholerae strain A1552 |
43.317 |
96.42 |
0.418 |
| pilC | Vibrio campbellii strain DS40M4 |
42.928 |
96.181 |
0.413 |
| pilC | Thermus thermophilus HB27 |
36.364 |
99.761 |
0.363 |