Detailed information
Bioinformatically predicted
Overview
| Name | pilU | Type | Machinery gene |
| Locus tag | CKV66_RS08990 | Genome accession | NZ_LT906434 |
| Coordinates | 1907774..1908907 (+) | Length | 377 a.a. |
| NCBI ID | WP_085363090.1 | Uniprot ID | A0A1X3CTV4 |
| Organism | Neisseria zoodegmatis strain NCTC12230 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1902774..1913907
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CKV66_RS08980 (SAMEA4504057_01760) | - | 1906284..1906604 (-) | 321 | WP_085363088.1 | DUF5339 family protein | - |
| CKV66_RS08985 (SAMEA4504057_01761) | - | 1906917..1907621 (-) | 705 | WP_085363089.1 | 5'-methylthioadenosine/adenosylhomocysteine nucleosidase | - |
| CKV66_RS08990 (SAMEA4504057_01762) | pilU | 1907774..1908907 (+) | 1134 | WP_085363090.1 | PilT/PilU family type 4a pilus ATPase | Machinery gene |
| CKV66_RS08995 (SAMEA4504057_01763) | glyA | 1909100..1910350 (-) | 1251 | WP_085363091.1 | serine hydroxymethyltransferase | - |
| CKV66_RS09000 (SAMEA4504057_01764) | recN | 1910744..1912411 (+) | 1668 | WP_085363092.1 | DNA repair protein RecN | - |
Sequence
Protein
Download Length: 377 a.a. Molecular weight: 42389.52 Da Isoelectric Point: 6.0580
>NTDB_id=1146947 CKV66_RS08990 WP_085363090.1 1907774..1908907(+) (pilU) [Neisseria zoodegmatis strain NCTC12230]
MVENENPLPAKEEIYSLLRTLNKYKGSDLFITANFPPAMKLDGKITRINETPLTPERCMEIAFSIMGPKQMEEFTNTNEC
NFAISLPDTSRFRVNAMVQRGATALVFRTITSNIPKFENLNLPPVLKQIAMQKRGLVIFVGGTGSGKSTSLASMIDYRNE
NSFDHIITIEDPIEFVHSHKNCIITQREVGVDTENWFAALKNTLRQAPDVILIGEIRDRETMDYAIAFAETGHLCMATLH
ANSTNQALDRIINFFPEERRTQLLTDLSLNLQAFISQRLIPREGGKGRVAAVEVLLNSPLIAELIHNGDVHSIKEIMKKS
QSLGMQTFDQALYELYESGHISFQDAIKNADSAHDLRLDIQLRSRRAQNAGPDLELI
MVENENPLPAKEEIYSLLRTLNKYKGSDLFITANFPPAMKLDGKITRINETPLTPERCMEIAFSIMGPKQMEEFTNTNEC
NFAISLPDTSRFRVNAMVQRGATALVFRTITSNIPKFENLNLPPVLKQIAMQKRGLVIFVGGTGSGKSTSLASMIDYRNE
NSFDHIITIEDPIEFVHSHKNCIITQREVGVDTENWFAALKNTLRQAPDVILIGEIRDRETMDYAIAFAETGHLCMATLH
ANSTNQALDRIINFFPEERRTQLLTDLSLNLQAFISQRLIPREGGKGRVAAVEVLLNSPLIAELIHNGDVHSIKEIMKKS
QSLGMQTFDQALYELYESGHISFQDAIKNADSAHDLRLDIQLRSRRAQNAGPDLELI
Nucleotide
Download Length: 1134 bp
>NTDB_id=1146947 CKV66_RS08990 WP_085363090.1 1907774..1908907(+) (pilU) [Neisseria zoodegmatis strain NCTC12230]
ATGGTTGAAAACGAAAACCCTTTACCCGCAAAAGAAGAAATCTATTCACTGCTGAGAACCTTAAACAAATACAAAGGCTC
CGATCTCTTCATCACAGCCAATTTTCCGCCGGCCATGAAATTGGACGGCAAAATCACCCGCATCAACGAGACACCGCTCA
CGCCCGAGCGTTGCATGGAAATCGCGTTCTCCATCATGGGCCCCAAACAGATGGAAGAATTTACCAATACCAACGAATGC
AACTTCGCCATCAGCCTGCCCGACACCAGCCGTTTCCGTGTCAATGCCATGGTTCAGCGCGGTGCAACGGCTTTGGTATT
CCGTACCATTACCAGCAACATCCCCAAATTTGAAAATCTCAACCTGCCGCCGGTTTTAAAACAAATCGCCATGCAGAAAC
GCGGCTTGGTGATTTTTGTCGGCGGCACGGGCTCGGGTAAATCGACCTCGCTGGCCTCTATGATCGACTACCGCAACGAA
AACAGCTTCGACCACATTATCACCATCGAAGATCCGATCGAATTCGTACACAGCCACAAAAACTGCATCATTACCCAGCG
CGAAGTCGGCGTGGACACCGAAAACTGGTTTGCCGCGCTGAAAAACACGCTGCGCCAAGCCCCCGACGTGATTTTGATCG
GTGAGATCCGCGACCGCGAAACCATGGATTACGCCATTGCCTTCGCCGAAACCGGCCACTTGTGCATGGCTACGCTGCAC
GCCAACAGCACCAACCAAGCACTCGACCGCATCATCAACTTCTTCCCGGAAGAACGTCGAACCCAGCTGCTTACCGACCT
TTCGCTCAACCTGCAAGCCTTCATTTCACAGCGCCTGATTCCGCGCGAAGGCGGCAAAGGCCGTGTGGCCGCCGTGGAAG
TGTTGCTGAATTCGCCTCTGATTGCCGAATTAATCCACAACGGCGACGTGCATTCCATTAAAGAAATCATGAAAAAATCG
CAAAGCTTGGGCATGCAGACGTTCGACCAAGCGTTATACGAACTGTATGAAAGCGGGCACATCAGCTTCCAAGACGCCAT
TAAGAATGCCGACTCCGCCCACGACTTGCGCCTCGACATCCAGCTACGCAGCCGCCGCGCCCAAAATGCAGGGCCGGACT
TGGAGTTGATTTAA
ATGGTTGAAAACGAAAACCCTTTACCCGCAAAAGAAGAAATCTATTCACTGCTGAGAACCTTAAACAAATACAAAGGCTC
CGATCTCTTCATCACAGCCAATTTTCCGCCGGCCATGAAATTGGACGGCAAAATCACCCGCATCAACGAGACACCGCTCA
CGCCCGAGCGTTGCATGGAAATCGCGTTCTCCATCATGGGCCCCAAACAGATGGAAGAATTTACCAATACCAACGAATGC
AACTTCGCCATCAGCCTGCCCGACACCAGCCGTTTCCGTGTCAATGCCATGGTTCAGCGCGGTGCAACGGCTTTGGTATT
CCGTACCATTACCAGCAACATCCCCAAATTTGAAAATCTCAACCTGCCGCCGGTTTTAAAACAAATCGCCATGCAGAAAC
GCGGCTTGGTGATTTTTGTCGGCGGCACGGGCTCGGGTAAATCGACCTCGCTGGCCTCTATGATCGACTACCGCAACGAA
AACAGCTTCGACCACATTATCACCATCGAAGATCCGATCGAATTCGTACACAGCCACAAAAACTGCATCATTACCCAGCG
CGAAGTCGGCGTGGACACCGAAAACTGGTTTGCCGCGCTGAAAAACACGCTGCGCCAAGCCCCCGACGTGATTTTGATCG
GTGAGATCCGCGACCGCGAAACCATGGATTACGCCATTGCCTTCGCCGAAACCGGCCACTTGTGCATGGCTACGCTGCAC
GCCAACAGCACCAACCAAGCACTCGACCGCATCATCAACTTCTTCCCGGAAGAACGTCGAACCCAGCTGCTTACCGACCT
TTCGCTCAACCTGCAAGCCTTCATTTCACAGCGCCTGATTCCGCGCGAAGGCGGCAAAGGCCGTGTGGCCGCCGTGGAAG
TGTTGCTGAATTCGCCTCTGATTGCCGAATTAATCCACAACGGCGACGTGCATTCCATTAAAGAAATCATGAAAAAATCG
CAAAGCTTGGGCATGCAGACGTTCGACCAAGCGTTATACGAACTGTATGAAAGCGGGCACATCAGCTTCCAAGACGCCAT
TAAGAATGCCGACTCCGCCCACGACTTGCGCCTCGACATCCAGCTACGCAGCCGCCGCGCCCAAAATGCAGGGCCGGACT
TGGAGTTGATTTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilU | Pseudomonas stutzeri DSM 10701 |
61.364 |
93.369 |
0.573 |
| pilU | Acinetobacter baylyi ADP1 |
58.213 |
92.042 |
0.536 |
| pilU | Vibrio cholerae strain A1552 |
53.203 |
95.225 |
0.507 |
| pilT | Legionella pneumophila strain Lp02 |
44.012 |
88.594 |
0.39 |
| pilT | Legionella pneumophila strain ERS1305867 |
44.012 |
88.594 |
0.39 |
| pilT | Acinetobacter baumannii strain A118 |
43.713 |
88.594 |
0.387 |
| pilT | Acinetobacter nosocomialis M2 |
43.713 |
88.594 |
0.387 |
| pilT | Acinetobacter baumannii D1279779 |
43.713 |
88.594 |
0.387 |
| pilT | Pseudomonas aeruginosa PAK |
43.195 |
89.655 |
0.387 |
| pilT | Acinetobacter baylyi ADP1 |
42.647 |
90.186 |
0.385 |
| pilT | Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539 |
42.899 |
89.655 |
0.385 |
| pilT | Pseudomonas stutzeri DSM 10701 |
42.308 |
89.655 |
0.379 |
| pilT | Vibrio cholerae O1 biovar El Tor strain E7946 |
42.042 |
88.329 |
0.371 |
| pilT | Vibrio cholerae strain A1552 |
42.042 |
88.329 |
0.371 |
| pilT | Neisseria meningitidis 8013 |
40.29 |
91.512 |
0.369 |
| pilT | Neisseria gonorrhoeae MS11 |
39.826 |
91.247 |
0.363 |